Browse Element(s) Details


Os.7140.1.S1_at

Description gb:AK061014.1
DB_XREF= gi:32971032
TID=Os.7140.1
CNT=68
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.7140 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-306-B02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-204-B07, full insert sequence.
FL= gb:AK104559.1 gb:AK061014.1 gb:AK100815.1 gb:AK060022.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1655011/11GUN4-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g16540Os.50519.1.S1_at11/1111+9134491..9151172TPR Domain containing protein, expressed
LOC_Os11g16540Os.46636.1.S1_x_at1/1111+9134491..9151172TPR Domain containing protein, expressed
LOC_Os11g16550Os.7140.1.S1_at11/1111+9155231..9156467GUN4-like family protein, expressed
LOC_Os11g16560Os.56238.1.S1_at1/1111+9157312..9162128expressed protein
LOC_Os11g16570OsAffx.31002.1.S1_at11/1111+9162805..9163792hypothetical protein
LOC_Os11g16580Os.53870.1.A1_at10/1111+9165591..9170671Endonuclease III-like protein 1, putative, expressed
LOC_Os11g16590Os.52841.1.S1_at11/1111+9171035..9176539ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010019biological_processchloroplast-nucleus signaling pathway
GO:0015995biological_processchlorophyll biosynthesis
GO:0043085biological_processpositive regulation of enzyme activity
GO:0009507cellular_componentchloroplast
GO:0019899molecular_functionenzyme binding
GO:0046906molecular_functiontetrapyrrole binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7140.1.S1_at--629--4131Chr11:9155952..9155976 (25 bp)
CGCTTCTTCATCAGGGTTGGGTGGA
LOC_Os11g16550
Os.7140.1.S1_at--7--1791Chr11:9155991..9156015 (25 bp)
ACCGAGGTGGAGCAGTTCAACTACA
LOC_Os11g16550
Os.7140.1.S1_at--828--2531Chr11:9156009..9156033 (25 bp)
AACTACAGGGCCTTCCCTGATGAGT
LOC_Os11g16550
Os.7140.1.S1_at--813--6131Chr11:9156094..9156118 (25 bp)
GAGGGACACAGCTCCTGGGCAACAT
LOC_Os11g16550
Os.7140.1.S1_at--638--10511Chr11:9156120..9156144 (25 bp)
TTCACACATCCTGCCTTTGAAGAGG
LOC_Os11g16550
Os.7140.1.S1_at--56--5971Chr11:9156171..9156195 (25 bp)
GAGAATGACACACCTGATAACACTG
LOC_Os11g16550
Os.7140.1.S1_at--182--6751Chr11:9156236..9156260 (25 bp)
GTTCATGAGAGATTTCTTCAAGCCT
LOC_Os11g16550
Os.7140.1.S1_at--510--2651Chr11:9156255..9156279 (25 bp)
AAGCCTGACTACTCCTTTTGAGATT
LOC_Os11g16550
Os.7140.1.S1_at--1071--2391Chr11:9156361..9156385 (25 bp)
AAACATGTATCCGTAGTTCATCTGG
LOC_Os11g16550
Os.7140.1.S1_at--256--6751Chr11:9156376..9156400 (25 bp)
GTTCATCTGGATTGTTATGTCCTGT
LOC_Os11g16550
Os.7140.1.S1_at--561--10111Chr11:9156391..9156415 (25 bp)
TATGTCCTGTAAACATGCGTGGGAA
LOC_Os11g16550
Target Sequence 
CGCTTCTTCATCAGGGTTGGGTGGATGAAGAAGCTTGACACCGAGGTGGAGCAGTTCAACTACAGGGCCTTCCCTGATGA
GTTCATCTGGGAGCTGAATGATGACACGCCAGAGGGGCATCTCCCTCTCACCAATGCCCTCAGAGGGACACAGCTCCTGG
GCAACATCTTCACACATCCTGCCTTTGAAGAGGAGCAAGAAGATGAATTAGCAGCAGAGGAGAATGACACACCTGATAAC
ACTGGTCAGAGTAAGGATGGCAGCAAAGGGAAGGAGAGGCCAAAGTTCATGAGAGATTTCTTCAAGCCTGACTACTCCTT
TTGAGATTGGGGGGTAATTAAAAAGCATGGGAGTTTGTGATGCAGAGATGCTGGTCATGGTGCAATTGATTTANAAAAAA
AAAAAAAAGGAAACATGTATCCGTAGTTCATCTGGATTGTTATGTCCTGTAAACATGCGTGGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7140.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis