Browse Element(s) Details


Os.50519.1.S1_at

Description gb:AK121586.1
DB_XREF= gi:37991209
TID=Os.50519.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50519 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033037J24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033037J24, full insert sequence.
FL= gb:AK121586.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1654011/11TPR Domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g16500NANA11+9112594..9112958hypothetical protein
LOC_Os11g16510NANA11+9114797..9115739disease resistance protein RPM1 homolog, putative
LOC_Os11g16520NANA11+9120037..9120285hypothetical protein
LOC_Os11g16530Os.49889.1.S1_at11/1111+9124308..9129561NB-ARC domain containing protein, expressed
LOC_Os11g16530OsAffx.11464.1.S1_at1/1111+9124308..9129561NB-ARC domain containing protein, expressed
LOC_Os11g16540Os.50519.1.S1_at11/1111+9134491..9151172TPR Domain containing protein, expressed
LOC_Os11g16540Os.46636.1.S1_x_at1/1111+9134491..9151172TPR Domain containing protein, expressed
LOC_Os11g16550Os.7140.1.S1_at11/1111+9155231..9156467GUN4-like family protein, expressed
LOC_Os11g16560Os.56238.1.S1_at1/1111+9157312..9162128expressed protein
LOC_Os11g16570OsAffx.31002.1.S1_at11/1111+9162805..9163792hypothetical protein
LOC_Os11g16580Os.53870.1.A1_at10/1111+9165591..9170671Endonuclease III-like protein 1, putative, expressed
LOC_Os11g16590Os.52841.1.S1_at11/1111+9171035..9176539ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50519.1.S1_at--540--4971Chr11:9136326..9136350 (25 bp)
GCATCAGTCAGCTGCTCGTGATTAT
LOC_Os11g16540
Os.50519.1.S1_at--1135--3771Chr11:9136170..9136283 (25 bp)
CTCTGTGTTGGATCTGCTCTAATTA
LOC_Os11g16540
Os.50519.1.S1_at--634--9991Chr11:9136142..9136166 (25 bp)
TAGCCCTTGGCTTTAGGCTTCAGAA
LOC_Os11g16540
Os.50519.1.S1_at--89--2711Chr11:9136097..9136121 (25 bp)
AAGCTTTGGCATTCCTCTTTCGATA
LOC_Os11g16540
Os.50519.1.S1_at--1075--5411Chr11:9134872..9134896 (25 bp)
GAAGCCTTGTACAACATCGCTCGGG
LOC_Os11g16540
Os.50519.1.S1_at--253--4631Chr11:9134848..9134872 (25 bp)
GCGTATCATCATGTTGGCCTCAACA
LOC_Os11g16540
Os.50519.1.S1_at--1058--5551Chr11:9134780..9134804 (25 bp)
GAAAGATTACCCTATTCCCAGGCTT
LOC_Os11g16540
Os.50519.1.S1_at--347--3411Chr11:9134731..9134755 (25 bp)
CAGCAGGATCTCAAGCCAGGGTATT
LOC_Os11g16540
Os.50519.1.S1_at--690--6211Chr11:9134692..9134716 (25 bp)
GAGGCTGCGTTCAATTTGCATCTGA
LOC_Os11g16540
Os.50519.1.S1_at--760--6411Chr11:9134644..9134668 (25 bp)
GATCTCGCCAGACGGATTCTTAGGA
LOC_Os11g16540
Os.50519.1.S1_at--932--10031Chr11:9134530..9134554 (25 bp)
TAGTTGAATTTTGTGGCCGTCCATT
LOC_Os11g16540
Target Sequence 
GCATCAGTCAGCTGCTCGTGATTATCTGGAAGCTTATAAATTGAACCCAGAAAATCCATTTATAAATCTCTGTGTTGGAT
CTGCTCTAATTAATTTAGCCCTTGGCTTTAGGCTTCAGAATAAGAACCAGTGCATCGTTCAAGCTTTGGCATTCCTCTTT
CGATATCTGCGTCNTTGTGACAACAGCCAGGAAGCCTTGTACAACATCGCTCGGGCGTATCATCATGTTGGCCTCAACAC
CTTGGCAGCAATTTACTACGAGAAGGCTTTAGCCGTTGAGGTGAAAGATTACCCTATTCCCAGGCTTCCATACGAGGAGA
ATTCCTGTGCCCAGCAGGATCTCAAGCCAGGGTATTGCGATGTACGAAGAGAGGCTGCGTTCAATTTGCATCTGATTTAC
AAGAAAAGCGGAGCAGATGATCTCGCCAGACGGATTCTTAGGACTTACTGTACTATTTAGTAGTAGATAGAATTATACAT
GTATATATTTGGTATTTGCTAGTGTTCAGGTGACTGGGAACTGCACAAATTTTAGTTGAATTTTGTGGCCGTCCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50519.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis