Browse Element(s) Details


Os.49889.1.S1_at

Description gb:AK119293.1
DB_XREF= gi:37988916
TID=Os.49889.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49889 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-130-D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-130-D12, full insert sequence.
FL= gb:AK119293.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1653011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g16490Os.9566.1.S1_x_at3/1111+9106638..9107425hypothetical protein
LOC_Os11g16500NANA11+9112594..9112958hypothetical protein
LOC_Os11g16510NANA11+9114797..9115739disease resistance protein RPM1 homolog, putative
LOC_Os11g16520NANA11+9120037..9120285hypothetical protein
LOC_Os11g16530Os.49889.1.S1_at11/1111+9124308..9129561NB-ARC domain containing protein, expressed
LOC_Os11g16530OsAffx.11464.1.S1_at1/1111+9124308..9129561NB-ARC domain containing protein, expressed
LOC_Os11g16540Os.50519.1.S1_at11/1111+9134491..9151172TPR Domain containing protein, expressed
LOC_Os11g16540Os.46636.1.S1_x_at1/1111+9134491..9151172TPR Domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49889.1.S1_at--852--2591Chr11:9128158..9128182 (25 bp)
AACGAGCTACATGTGTTCTGCCAAC
LOC_Os11g16530
Os.49889.1.S1_at--764--10551Chr11:9128290..9128314 (25 bp)
TTCGGCATCGAGCATCTTTCGGGAC
LOC_Os11g16530
Os.49889.1.S1_at--637--5671Chr11:9128332..9128356 (25 bp)
GACATTAACTACTACTCTGGTGGCA
LOC_Os11g16530
Os.49889.1.S1_at--410--7731Chr11:9128350..9128410 (25 bp)
GGTGGCACTGACATGGATGCTTCCA
LOC_Os11g16530
Os.49889.1.S1_at--861--4991Chr11:9128448..9128472 (25 bp)
GCATGTCACCATGATGTTTACCCTG
LOC_Os11g16530
Os.49889.1.S1_at--114--4771Chr11:9128479..9128503 (25 bp)
GCTGCTCAGTCGGTTGGGCTCCAAA
LOC_Os11g16530
Os.49889.1.S1_at--665--9431Chr11:9128525..9128549 (25 bp)
TAGGGACGGATTTTCAGCGCACTTT
LOC_Os11g16530
Os.49889.1.S1_at--40--1651Chr11:9128540..9128560 (21 bp)
AGCGCACTTTCGTCCAAATTGAAGA
LOC_Os11g16530
Os.49889.1.S1_at--164--4871Chr11:9128693..9128717 (25 bp)
GCTATTATCACCTGAGTCTTCGACA
LOC_Os11g16530
Os.49889.1.S1_at--914--7131Chr11:9128708..9128732 (25 bp)
GTCTTCGACACGGAACCAGTAGCTT
LOC_Os11g16530
Os.49889.1.S1_at--88--6911Chr11:9128755..9128779 (25 bp)
GTATCTTCTGGAAATCTGGCCATCA
LOC_Os11g16530
Target Sequence 
AACGAGCTACATGTGTTCTGCCAACATTCCACAATGCCATTGACGTTCGCGCCTGGAGCAATGCCAGAGCTCCACCGTTT
ACGCCTCGAATTCGGGGCGAGGGAGACGTTGCGCATGTATGGTGATTTTGATTTCGGCATCGAGCATCTTTCGGGACTCC
GGGATATCAGAGTTGACATTAACTACTACTCTGGTGGCACTGACATGGATGCTTCCATCATCCATCCAAACCGCCCCTTA
CATGATGTCCGAATGCATGTCACCATGATGTTTACCCTGAAGGAGGCTGCTCAGTCGGTTGGGCTCCAAAGCGCCACGAA
AGAATTGAATTTAGGGACGGATTTTCAGCGCACTTTCGTCCAAATTGAAGACCTTGATAATCCAGAAGTTCTGCGAAAAC
TACAGCAGCTATTATCACCTGAGTCTTCGACACGGAACCAGTAGCTTGGGACTTGAAGAAACAACGTATGTATCTTCTGG
AAATCTGGCCATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49889.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis