Browse Element(s) Details


Os.46636.1.S1_x_at

Description gb:NM_197450.1
DB_XREF= gi:37536259
TID=Os.46636.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46636 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) ribosomal protein S4 (OSJNBb0005J14.15), mRNA.
PROD=ribosomal protein S4
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g165401/11TPR Domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g16500NANA11+9112594..9112958hypothetical protein
LOC_Os11g16510NANA11+9114797..9115739disease resistance protein RPM1 homolog, putative
LOC_Os11g16520NANA11+9120037..9120285hypothetical protein
LOC_Os11g16530Os.49889.1.S1_at11/1111+9124308..9129561NB-ARC domain containing protein, expressed
LOC_Os11g16530OsAffx.11464.1.S1_at1/1111+9124308..9129561NB-ARC domain containing protein, expressed
LOC_Os11g16540Os.50519.1.S1_at11/1111+9134491..9151172TPR Domain containing protein, expressed
LOC_Os11g16540Os.46636.1.S1_x_at1/1111+9134491..9151172TPR Domain containing protein, expressed
LOC_Os11g16550Os.7140.1.S1_at11/1111+9155231..9156467GUN4-like family protein, expressed
LOC_Os11g16560Os.56238.1.S1_at1/1111+9157312..9162128expressed protein
LOC_Os11g16570OsAffx.31002.1.S1_at11/1111+9162805..9163792hypothetical protein
LOC_Os11g16580Os.53870.1.A1_at10/1111+9165591..9170671Endonuclease III-like protein 1, putative, expressed
LOC_Os11g16590Os.52841.1.S1_at11/1111+9171035..9176539ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46636.1.S1_x_at--280--5513Chr10:20138808..20138832 (25 bp)
GAACAATATCGTATTCGTCTTCAAG
NONE
Os.46636.1.S1_x_at--963--3154Chr10:20138842..20138866 (25 bp)
AATTGCGTTTTCATTATGGTCTGAC
NONE
Os.46636.1.S1_x_at--597--7814Chr10:20138922..20138946 (25 bp)
GGTCAGGTTTTACTACAATTACTTG
NONE
Os.46636.1.S1_x_at--864--7955Chr10:20138957..20138981 (25 bp)
GGATAATATCCTTTTTCGATTAGGT
NONE
Os.46636.1.S1_x_at--249--9994Chr10:20138977..20139001 (25 bp)
TAGGTATGGCTTCAACCATTCCCGA
NONE
Os.46636.1.S1_x_at--656--6195Chr10:20139000..20139024 (25 bp)
GAGGCCCGGCAATTAGTTAACCATA
NONE
Os.46636.1.S1_x_at--280--6815Chr10:20139064..20139088 (25 bp)
GTTTTCGTTGCAAACCCCGAGATAT
NONE
Os.46636.1.S1_x_at--265--3154Chr10:20139132..20139156 (25 bp)
AATTCTATTGCTTCATCCGACCCGG
NONE
Os.46636.1.S1_x_at--159--4955Chr10:20139170..20139194 (25 bp)
GCATTTGACGATTGACACATTGCAA
NONE
Os.46636.1.S1_x_at--936--275Chr10:20139223..20139247 (25 bp)
ATAGGAAGTGGGTCGGTCTCAAAAT
NONE
Os.46636.1.S1_x_at--1029--5215Chr10:20139267..20139291 (25 bp)
GAATATTACTCTCGTCAAACTTGAA
NONE
Target Sequence 
GAACAATATCGTATTCGTCTTCAAGAAAAACAGAAATTGCGTTTTCATTATGGTCTGACAGAACGACAATTACTTAGATA
TGTACATATCGCTGGAAAAGCAAAAAGTTCAACAGGTCAGGTTTTACTACAATTACTTGAAATGCGTTTGGATAATATCC
TTTTTCGATTAGGTATGGCTTCAACCATTCCCGAGGCCCGGCAATTAGTTAACCATAGACATATTTTAGTTAATGGTCGT
ATAGTCGATATACCAAGTTTTCGTTGCAAACCCCGAGATATTATTACTACGAAGGATAACCAAAGATCAAAACGTCTGGT
TCAAAATTCTATTGCTTCATCCGACCCGGGGAAATTGCCAAAGCATTTGACGATTGACACATTGCAATATAAAGGACTAG
TAAAAAAAATCCTGGATAGGAAGTGGGTCGGTCTCAAAATAAATGAGTTGTTAGTTGTAGAATATTACTCTCGTCAAACT
TGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46636.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis