Browse Element(s) Details


Os.52841.1.S1_at

Description gb:AK100126.1
DB_XREF= gi:32985335
TID=Os.52841.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.52841 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023008I20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023008I20, full insert sequence.
FL= gb:AK100126.1 gb:AK069552.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1659011/11ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g16540Os.50519.1.S1_at11/1111+9134491..9151172TPR Domain containing protein, expressed
LOC_Os11g16540Os.46636.1.S1_x_at1/1111+9134491..9151172TPR Domain containing protein, expressed
LOC_Os11g16550Os.7140.1.S1_at11/1111+9155231..9156467GUN4-like family protein, expressed
LOC_Os11g16560Os.56238.1.S1_at1/1111+9157312..9162128expressed protein
LOC_Os11g16570OsAffx.31002.1.S1_at11/1111+9162805..9163792hypothetical protein
LOC_Os11g16580Os.53870.1.A1_at10/1111+9165591..9170671Endonuclease III-like protein 1, putative, expressed
LOC_Os11g16590Os.52841.1.S1_at11/1111+9171035..9176539ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed
LOC_Os11g16600OsAffx.18881.1.S1_at10/1111+9181792..9183149hypothetical protein
LOC_Os11g16610NANA11+9185974..9190784retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g16619NANA11+9192653..9192997NA
LOC_Os11g16630OsAffx.31009.1.S1_at11/1111+9201076..9204655hypothetical protein
LOC_Os11g16630OsAffx.23366.2.S1_s_at1/1111+9201076..9204655hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006510biological_processATP-dependent proteolysis
GO:0009408biological_processresponse to heat
GO:0009658biological_processchloroplast organization and biogenesis
GO:0045037biological_processprotein import into chloroplast stroma
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0009570cellular_componentchloroplast stroma
GO:0004176molecular_functionATP-dependent peptidase activity
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52841.1.S1_at--767--8551Chr11:9171432..9171456 (25 bp)
TGGAGGACACGCTCACGGACAAGAT
LOC_Os11g16590
Os.52841.1.S1_at--533--2271Chr11:9171304..9171328 (25 bp)
AAATCGCCGGCGTTTACTGTCTAGG
LOC_Os11g16590
Os.52841.1.S1_at--182--8251Chr11:9171296..9171320 (25 bp)
GGCGTTTACTGTCTAGGATTACTAC
LOC_Os11g16590
Os.52841.1.S1_at--973--10471Chr11:9171278..9171302 (25 bp)
TTACTACTACGGCTGCTGCATTTTC
LOC_Os11g16590
Os.52841.1.S1_at--1076--3831Chr11:9171263..9171287 (25 bp)
CTGCATTTTCAGCTATTACTATCTT
LOC_Os11g16590
Os.52841.1.S1_at--1075--3571Chr11:9171222..9171246 (25 bp)
CATTAGCTAGGGATAAACTGTCATA
LOC_Os11g16590
Os.52841.1.S1_at--595--2371Chr11:9171167..9171191 (25 bp)
AAACCTATTATTAGCATCTTGGTAG
LOC_Os11g16590
Os.52841.1.S1_at--1155--4871Chr11:9171122..9171146 (25 bp)
GCTTAGTTAATCTTACGCACTCAAT
LOC_Os11g16590
Os.52841.1.S1_at--424--9951Chr11:9171109..9171133 (25 bp)
TACGCACTCAATTCTTTTATGGTTG
LOC_Os11g16590
Os.52841.1.S1_at--925--811Chr11:9171091..9171115 (25 bp)
ATGGTTGATGCACTTTAATTCCTTT
LOC_Os11g16590
Os.52841.1.S1_at--642--10211Chr11:9171040..9171064 (25 bp)
TATTCTTGTAGTCCCATTTTAGTGC
LOC_Os11g16590
Target Sequence 
TGGAGGACACGCTCACGGACAAGATGCTCGCCGGGGAGATCTGCGCCGGCGACTCGGTGATCGTCGACGCCGACGGTGAC
GGGAACGTCGTCGTGGTCGGCCGGCGCAGCGCCGGCTTGCCGGACCTGAAATCGCCGGCGTTTACTGTCTAGGATTACTA
CTACGGCTGCTGCATTTTCAGCTATTACTATCTTTTTGTGTTTGTGTATACATTAGCTAGGGATAAACTGTCATAGTATT
TCTTATCTTTTTTTTTTGAAAAAAAAAAACCTATTATTAGCATCTTGGTAGAGAGACAGATGGTAGGAATAGCTTAGTTA
ATCTTACGCACTCAATTCTTTTATGGTTGATGCACTTTAATTCCTTTGTTAGGAATCTCAAAAGTTATCTTCATATTCTT
GTAGTCCCATTTTAGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52841.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis