Browse Element(s) Details


OsAffx.18881.1.S1_at

Description tigr:9639.m01502
TID=OsAffx.18881.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1660010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g16560Os.56238.1.S1_at1/1111+9157312..9162128expressed protein
LOC_Os11g16570OsAffx.31002.1.S1_at11/1111+9162805..9163792hypothetical protein
LOC_Os11g16580Os.53870.1.A1_at10/1111+9165591..9170671Endonuclease III-like protein 1, putative, expressed
LOC_Os11g16590Os.52841.1.S1_at11/1111+9171035..9176539ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed
LOC_Os11g16600OsAffx.18881.1.S1_at10/1111+9181792..9183149hypothetical protein
LOC_Os11g16610NANA11+9185974..9190784retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g16619NANA11+9192653..9192997NA
LOC_Os11g16630OsAffx.31009.1.S1_at11/1111+9201076..9204655hypothetical protein
LOC_Os11g16630OsAffx.23366.2.S1_s_at1/1111+9201076..9204655hypothetical protein
LOC_Os11g16640Os.46314.3.S1_at1/1111+9206257..9209266transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18881.1.S1_at--432--10373Chr09:13653959..13654346 (25 bp)
TTTTATATATGTTCGGGCCCTTTAT
NONE
OsAffx.18881.1.S1_at--219--7571NONE
GGGCCCTTTATCTAACAGTTTCAGC
NONE
OsAffx.18881.1.S1_at--380--5631Chr11:9182003..9182027 (25 bp)
GACACATGCTAGGATGCGTGCTTTT
LOC_Os11g16600
OsAffx.18881.1.S1_at--1134--6331Chr11:9181991..9182015 (25 bp)
GATGCGTGCTTTTGTTCCATTCAAA
LOC_Os11g16600
OsAffx.18881.1.S1_at--331--6851Chr11:9181923..9181947 (25 bp)
GTTTGTCACTTGCTACTGAATTCCC
LOC_Os11g16600
OsAffx.18881.1.S1_at--32--9011Chr11:9181907..9181931 (25 bp)
TGAATTCCCAGAGTCGCCAGTATGA
LOC_Os11g16600
OsAffx.18881.1.S1_at--919--7231Chr11:9181895..9181919 (25 bp)
GTCGCCAGTATGAAGAATGCAACCT
LOC_Os11g16600
OsAffx.18881.1.S1_at--860--5151Chr11:9181877..9181901 (25 bp)
GCAACCTGAAAACAGTTGTGCTTCA
LOC_Os11g16600
OsAffx.18881.1.S1_at--486--10531Chr11:9181856..9181880 (25 bp)
TTCAGAATTCTGACAACGCCGGCAG
LOC_Os11g16600
OsAffx.18881.1.S1_at--252--2611Chr11:9181842..9181866 (25 bp)
AACGCCGGCAGTTCAGCTCATGAGT
LOC_Os11g16600
OsAffx.18881.1.S1_at--315--4831Chr11:9181827..9181851 (25 bp)
GCTCATGAGTCAGGCAATTTATCAA
LOC_Os11g16600
Target Sequence 
TTTTATATATGTTCGGGCCCTTTATCTAACAGTTTCAGCAGAATTGTTGAAGACACATGCTAGGATGCGTGCTTTTGTTC
CATTCAAAAATTATATAGTTTGTCACTTGCTACTGAATTCCCAGAGTCGCCAGTATGAAGAATGCAACCTGAAAACAGTT
GTGCTTCAGAATTCTGACAACGCCGGCAGTTCAGCTCATGAGTCAGGCAATTTATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18881.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis