Browse Element(s) Details


Os.7166.1.S1_at

Description gb:AK072450.1
DB_XREF= gi:32982473
TID=Os.7166.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7166 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023118D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023118D10, full insert sequence.
FL= gb:AK072450.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6061011/11CRAL/TRIO domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60550Os.17427.1.S1_at11/113+34351774..34358073ThiF family protein, expressed
LOC_Os03g60550OsAffx.25657.1.S1_s_at1/113+34351774..34358073ThiF family protein, expressed
LOC_Os03g60560Os.28441.1.S1_at11/113+34363114..34364034Zinc finger, C2H2 type family protein, expressed
LOC_Os03g60570Os.15874.1.A1_at11/113+34366638..34367547Zinc finger, C2H2 type family protein, expressed
LOC_Os03g60580Os.39973.1.S1_s_at11/113+34369405..34370315Actin-depolymerizing factor 4, putative, expressed
LOC_Os03g60590Os.12749.1.S1_s_at11/113+34370595..34373158Actin-depolymerizing factor 3, putative, expressed
LOC_Os03g60600Os.16870.1.A1_at11/113+34373945..34377386Zinc knuckle family protein, expressed
LOC_Os03g60610Os.7166.1.S1_at11/113+34378288..34383367CRAL/TRIO domain containing protein, expressed
LOC_Os03g60620Os.11822.1.S1_at11/113+34385257..34389873Heat shock cognate 70 kDa protein 2, putative, expressed
LOC_Os03g60620OsAffx.29152.1.S1_s_at1/113+34385257..34389873Heat shock cognate 70 kDa protein 2, putative, expressed
LOC_Os03g60630OsAffx.3658.1.S1_at11/113+34394469..34395536Dof domain, zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7166.1.S1_at--490--10391Chr03:34378805..34378829 (25 bp)
TTTTGCCATGTCAACCAGGATCCAC
LOC_Os03g60610
Os.7166.1.S1_at--659--1611Chr03:34378769..34378793 (25 bp)
AGCTGTCAGTTGTCTTCCATTTGCA
LOC_Os03g60610
Os.7166.1.S1_at--363--7511Chr03:34378741..34378765 (25 bp)
GTGGTTGCTAGAGGCGTTTTTCATA
LOC_Os03g60610
Os.7166.1.S1_at--1059--8591Chr03:34378705..34378729 (25 bp)
TGGTCTGTACTATGTGCGCCACATG
LOC_Os03g60610
Os.7166.1.S1_at--274--2791Chr03:34378668..34378692 (25 bp)
AAGAGTATCTTCGAGTCGCTCACTG
LOC_Os03g60610
Os.7166.1.S1_at--27--7471Chr03:34378629..34378653 (25 bp)
GTGTGCGATTCAGCATTACCTTGAA
LOC_Os03g60610
Os.7166.1.S1_at--646--2831Chr03:34378526..34378550 (25 bp)
AAGTTTGCCGACTTGTCAGTTTATC
LOC_Os03g60610
Os.7166.1.S1_at--1033--7871Chr03:34378473..34378497 (25 bp)
GGTTCTTACACTTAATACTTCCTGG
LOC_Os03g60610
Os.7166.1.S1_at--377--1671Chr03:34378402..34378426 (25 bp)
AGCCAGGTCCCTGTGCTATGTATGG
LOC_Os03g60610
Os.7166.1.S1_at--1145--5251Chr03:34378368..34378392 (25 bp)
GAATCCAGTCTGGTGCTGAACTACT
LOC_Os03g60610
Os.7166.1.S1_at--1098--3331Chr03:34378331..34378355 (25 bp)
CACGTGCTTGTCGAACTCCTAAATA
LOC_Os03g60610
Target Sequence 
TTTTGCCATGTCAACCAGGATCCACAGAACCACCTGAGCTGTCAGTTGTCTTCCATTTGCATCTGTGGTTGCTAGAGGCG
TTTTTCATAGCAGATTTTCGTGGTCTGTACTATGTGCGCCACATGCTAAAGCATCAAAAGAGTATCTTCGAGTCGCTCAC
TGGGAGGTCATATGAGGTGTGCGATTCAGCATTACCTTGAAATAGTCAGTTAGAACAAGACAATTCCTTGTTTTGTTTTG
GTGCCATCTTAGTATATATAGTAGTATTAGTTTGTCTGTAAGTTTGCCGACTTGTCAGTTTATCGTGGGTGGCTATATAG
TATCTAGAAGATGGTTCTTACACTTAATACTTCCTGGAAAATTCTACGAACGCTACTTGAAAACTGGAATTTCTCATCTG
AGAAGCCAGGTCCCTGTGCTATGTATGGGTGAACGGAGAATCCAGTCTGGTGCTGAACTACTAATGAATGAATGCACGTG
CTTGTCGAACTCCTAAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7166.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis