Browse Element(s) Details


Os.7168.1.S1_at

Description gb:AK071113.1
DB_XREF= gi:32981136
TID=Os.7168.1
CNT=23
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.7168 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-010-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023077E11, full insert sequence.
FL= gb:AK103912.1 gb:AK071113.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4662010/11Chaperone protein dnaJ 10, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46580Os.4161.1.S1_at11/115+26883239..26886623Farnesyl pyrophosphate synthetase, putative, expressed
LOC_Os05g46590OsAffx.15129.1.S1_at11/115+26889094..26889699hypothetical protein
LOC_Os05g46600OsAffx.27341.1.S1_at11/115+26890405..26891228hypothetical protein
LOC_Os05g46610OsAffx.4639.1.S1_at11/115+26904201..26905534Myb-related protein Hv33, putative, expressed
LOC_Os05g46610Os.57514.1.S1_x_at1/115+26904201..26905534Myb-related protein Hv33, putative, expressed
LOC_Os05g46620OsAffx.4640.1.S1_x_at11/115+26907971..26911875Chaperone protein dnaJ 10, putative, expressed
LOC_Os05g46620Os.7168.1.S1_at10/115+26907971..26911875Chaperone protein dnaJ 10, putative, expressed
LOC_Os05g46630Os.8550.1.S1_x_at11/115+26912470..26915901expressed protein
LOC_Os05g46640OsAffx.27342.1.S1_at11/115+26916366..26917351hypothetical protein
LOC_Os05g46650NANA5+26918379..26918819hypothetical protein
LOC_Os05g46660NANA5+26922489..26924411transposon protein, putative, Mutator sub-class
LOC_Os05g46670NANA5+26927289..26927726transposon protein, putative, unclassified
LOC_Os05g46680OsAffx.15130.1.S1_at11/115+26935282..26935895hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7168.1.S1_at--114--4051NONE
CGATATTCCAGGGTGCGAAGTCTCT
NONE
Os.7168.1.S1_at--553--5331Chr05:26908295..26908319 (25 bp)
GAAGTCTCTGTACCATCGTGAAAAC
LOC_Os05g46620
Os.7168.1.S1_at--100--3951Chr05:26908246..26908270 (25 bp)
CGGCAGGGAGCAGCAACATCGAACT
LOC_Os05g46620
Os.7168.1.S1_at--726--1171Chr05:26908188..26908212 (25 bp)
AGTACACCTGACAGACGCAATTTCT
LOC_Os05g46620
Os.7168.1.S1_at--35--10611Chr05:26908167..26908191 (25 bp)
TTCTGGTTTTTTGGAGGTGTCGTCT
LOC_Os05g46620
Os.7168.1.S1_at--331--1391Chr05:26908109..26908133 (25 bp)
AGACGACGCGTATCGTTCTGGATAA
LOC_Os05g46620
Os.7168.1.S1_at--645--9531Chr05:26908075..26908099 (25 bp)
TTTGATTTGGTCTCCGTTTTCTTTG
LOC_Os05g46620
Os.7168.1.S1_at--980--8851Chr05:26908041..26908065 (25 bp)
TGATGCTGTCGTGAGCTCTGAACAC
LOC_Os05g46620
Os.7168.1.S1_at--664--10791Chr05:26908009..26908033 (25 bp)
TTGTTGGTGCTCTGCAACCTGCATA
LOC_Os05g46620
Os.7168.1.S1_at--791--1751Chr05:26907993..26908017 (25 bp)
ACCTGCATATTACTAGCTTGGGCTA
LOC_Os05g46620
Os.7168.1.S1_at--621--3711Chr05:26907981..26908005 (25 bp)
CTAGCTTGGGCTATCTCGTTGTAAG
LOC_Os05g46620
Target Sequence 
CGATATTCCAGGGTGCGAAGTCTCTGTACCATCGTGAAAACAGCCTACAGGTGGAAACCAGCCCACGGCAGGGAGCAGCA
ACATCGAACTGAAGACTGCAAAAGTACAAAAAGGAAAAAAAAAAGTACACCTGACAGACGCAATTTCTGGTTTTTTGGAG
GTGTCGTCTCTCNTGTCCGTTTATTCATTTTTGTAAGATTTTAGACGACGCGTATCGTTCTGGATAAAATTTGCTGTTTG
ATTTGGTCTCCGTTTTCTTTGTAAAAATGGTGATGCTGTCGTGAGCTCTGAACACGAAGATTTTGTTGGTGCTCTGCAAC
CTGCATATTACTAGCTTGGGCTATCTCGTTGTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7168.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis