Browse Element(s) Details


Os.7194.1.S1_at

Description gb:AK072629.1
DB_XREF= gi:32982652
TID=Os.7194.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7194 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023125P05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023125P05, full insert sequence.
FL= gb:AK072629.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2531010/1126S proteasome non-ATPase regulatory subunit 9, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25260Os.52695.1.A1_at3/119+15125330..15127928IBR domain containing protein, expressed
LOC_Os09g25270NANA9+15128714..15129076hypothetical protein
LOC_Os09g25280NANA9+15130483..15131397retrotransposon protein, putative, LINE subclass
LOC_Os09g25290Os.12965.1.S1_at11/119+15134235..15138320Methyladenine glycosylase family protein, expressed
LOC_Os09g25300Os.40360.1.S1_at9/119+15143153..15146964hypothetical protein
LOC_Os09g25300Os.40360.1.S1_x_at7/119+15143153..15146964hypothetical protein
LOC_Os09g25300Os.40855.5.S1_x_at3/119+15143153..15146964hypothetical protein
LOC_Os09g25310Os.7194.1.S1_at10/119+15152763..1515600126S proteasome non-ATPase regulatory subunit 9, putative, expressed
LOC_Os09g25320Os.8168.1.S1_at10/119+15159892..15161883polyubiquitin 2, putative, expressed
LOC_Os09g25330Os.8752.1.S1_at11/119+15162138..15167797NPH3 family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0007242biological_processintracellular signaling cascade
GO:0005838cellular_componentproteasome regulatory particle (sensu Eukaryota)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7194.1.S1_at--1087--10831Chr09:15153160..15153180 (21 bp)
TTGGGATGCCATTTCCGAATCTTAT
LOC_Os09g25310
Os.7194.1.S1_at--137--4431Chr09:15153126..15153150 (25 bp)
GCCATGGTCCCACATCTATGAAAGA
LOC_Os09g25310
Os.7194.1.S1_at--434--10411Chr09:15153086..15153110 (25 bp)
TTTTGTGCTTGCAGACAGAGCTCTT
LOC_Os09g25310
Os.7194.1.S1_at--364--4891Chr09:15152999..15153023 (25 bp)
GCTTTCATGTTTGTACTTGTGCAGA
LOC_Os09g25310
Os.7194.1.S1_at--871--9031Chr09:15152967..15152991 (25 bp)
TGCAGCACCGAGAGCAATCTGATTA
LOC_Os09g25310
Os.7194.1.S1_at--677--8971Chr09:15152940..15152964 (25 bp)
TGAATGCGTGTCCAAACCTTTTAGC
LOC_Os09g25310
Os.7194.1.S1_at--233--1751Chr09:15152925..15152949 (25 bp)
ACCTTTTAGCATCCCCTTATTACAT
LOC_Os09g25310
Os.7194.1.S1_at--951--11Chr09:15152896..15152920 (25 bp)
ATTGGAAGCAAACCTGGCTGCCTTT
LOC_Os09g25310
Os.7194.1.S1_at--682--6271Chr09:15152818..15152842 (25 bp)
GATGTCTTATGCACAATCTTTTTGA
LOC_Os09g25310
Os.7194.1.S1_at--693--2272Chr09:15152782..15152806 (25 bp)
AAATCTGAGTCTGTTGGCACTAACC
LOC_Os09g25310
Os.7194.1.S1_at--454--9791Chr09:15152762..15152786 (25 bp)
TAACCAGTAACCACTCCTTGACTGA
NONE
Target Sequence 
TTGGGATGCCATTTCCGAATCTTATGAACAACGGNGCCATGGTCCCACATCTATGAAAGAACGAGATGGTTTCGTTTTTG
TGCTTGCAGACAGAGCTCTTGCAGAATCAGCGATAACATTCAACATCTAAGACAATCTGATTAACCTATGAAAGGATTAA
ATGCTTTCATGTTTGTACTTGTGCAGACAGCCCTTGCAGCACCGAGAGCAATCTGATTAACTGAATGCGTGTCCAAACCT
TTTAGCATCCCCTTATTACATGTACATTGGAAGCAAACCTGGCTGCCTTTGTTNGGAGTTTTTTTTAGGTGCATTGTTCT
CATGCATATTGGTCCTATGAAATGATGTCTTATGCACAATCTTTTTGAAAAAGCGATGTAAATCTGAGTCTGTTGGCACT
AACCAGTAACCACTCCTTGACTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7194.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis