Browse Element(s) Details


Os.8168.1.S1_at

Description gb:AK099513.1
DB_XREF= gi:32984722
TID=Os.8168.1
CNT=49
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8168 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013029K20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013029K20, full insert sequence.
FL= gb:AK099513.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2532010/11polyubiquitin 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25290Os.12965.1.S1_at11/119+15134235..15138320Methyladenine glycosylase family protein, expressed
LOC_Os09g25300Os.40360.1.S1_at9/119+15143153..15146964hypothetical protein
LOC_Os09g25300Os.40360.1.S1_x_at7/119+15143153..15146964hypothetical protein
LOC_Os09g25300Os.40855.5.S1_x_at3/119+15143153..15146964hypothetical protein
LOC_Os09g25310Os.7194.1.S1_at10/119+15152763..1515600126S proteasome non-ATPase regulatory subunit 9, putative, expressed
LOC_Os09g25320Os.8168.1.S1_at10/119+15159892..15161883polyubiquitin 2, putative, expressed
LOC_Os09g25330Os.8752.1.S1_at11/119+15162138..15167797NPH3 family protein, expressed
LOC_Os09g25340NANA9+15185138..15188343transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006464biological_processprotein modification
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0009733biological_processresponse to auxin stimulus
GO:0045116biological_processprotein neddylation
GO:0005622cellular_componentintracellular
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8168.1.S1_at--576--1611Chr09:15161195..15161219 (25 bp)
AGCGTTTGATATTCGCCGGCAAGCA
LOC_Os09g25320
Os.8168.1.S1_at--600--2791Chr09:15161225..15161249 (25 bp)
AAGATGGGCGCACACTGGCCGACTA
LOC_Os09g25320
Os.8168.1.S1_at--648--2891Chr09:15161260..15161284 (25 bp)
AAGGAGTCAACTCTTCACTTGGTCC
LOC_Os09g25320
Os.8168.1.S1_at--1099--5591Chr09:15161341..15161365 (25 bp)
GAAATTGACATTGAGCCCACCGACA
LOC_Os09g25320
Os.8168.1.S1_at--341--5951Chr09:15161395..15161419 (25 bp)
GAGAAAGAAGGCATTCCTCCCGTGC
LOC_Os09g25320
Os.8168.1.S1_at--170--3811Chr09:15161411..15161578 (25 bp)
CTCCCGTGCAGCAAAGGCTTATCTA
LOC_Os09g25320
Os.8168.1.S1_at--232--9871Chr09:15161696..15161720 (25 bp)
TACTTAGCTCAATACCTTCGAATGG
LOC_Os09g25320
Os.8168.1.S1_at--560--3531Chr09:15161769..15161793 (25 bp)
CATGCTAGCTTTGCACATTTGCCTA
LOC_Os09g25320
Os.8168.1.S1_at--1109--6011Chr09:15161798..15161822 (25 bp)
GAGAGGTTGTCTTCCATGTTATTAT
LOC_Os09g25320
Os.8168.1.S1_at--848--6191Chr09:15161835..15161859 (25 bp)
GAGGCATATTATTCCAGATTCACCA
LOC_Os09g25320
Os.8168.1.S1_at--1119--1251NONE
AGATTCACCAGTTCTTCACTGTTGG
NONE
Target Sequence 
AGCGTTTGATATTCGCCGGCAAGCAGCTGGAAGATGGGCGCACACTGGCCGACTACAACATTCAGAAGGAGTCAACTCTT
CACTTGGTCCTCAGGCTCAGGGGTGGCACTATGATCAAGGTTAAGACCCTCACTGGAAAAGAGATTGAAATTGACATTGA
GCCCACCGACACGATCGATAGGATCAAGGAGCGTGTTGAGGAGAAAGAAGGCATTCCTCCCGTGCAGCAAAGGCTTATCT
ATGCTGGTAAGCAGCTTGCCGACGACAAGACTGCGAAGGACTATAACATCGAAGGTGGCTCTGTCCTCCATCTTGTCCTT
GCTCTGAGGGGTGGTTATTAGTAAAGCTAATGTGCTAGTACTTAGCTCAATACCTTCGAATGGCTGAGAAAANTTACTCT
TGTTGGCATGGAACTTGCGAAGGGATAATAACATGCTAGCTTTGCACATTTGCCTAGTGGGAGAGGTTGTCTTCCATGTT
ATTATCTTATATGATTTGAGGCATATTATTCCAGATTCACCAGTTCTTCACTGTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8168.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis