Browse Element(s) Details


Os.7219.1.S1_at

Description gb:AK059004.1
DB_XREF= gi:32969022
TID=Os.7219.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.7219 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013096L11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-020-H03, full insert sequence.
FL= gb:AK059004.1 gb:AK098995.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1124011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g11220OsAffx.6468.1.S1_at8/119+6217761..6224987retrotransposon protein, putative, unclassified, expressed
LOC_Os09g11220OsAffx.6468.1.S1_x_at4/119+6217761..6224987retrotransposon protein, putative, unclassified, expressed
LOC_Os09g11230Os.17604.1.S1_at11/119+6232897..6237918Serine/threonine protein phosphatase PP-X isozyme 2, putative, expressed
LOC_Os09g11230OsAffx.6232.1.S1_s_at10/119+6232897..6237918Serine/threonine protein phosphatase PP-X isozyme 2, putative, expressed
LOC_Os09g11230OsAffx.6232.1.S1_at2/119+6232897..6237918Serine/threonine protein phosphatase PP-X isozyme 2, putative, expressed
LOC_Os09g11240Os.7219.1.S1_at11/119+6242180..6244884expressed protein
LOC_Os09g11250Os.24787.1.S1_at8/119+6245257..6248737co-chaperone GrpE family protein, expressed
LOC_Os09g11260OsAffx.29802.1.S1_at10/119+6249839..6250492hypothetical protein
LOC_Os09g11270Os.11452.1.S1_at11/119+6250864..6259438enhancer of polycomb, putative, expressed
LOC_Os09g11280OsAffx.17642.1.S1_at8/119+6261724..6262591hypothetical protein
LOC_Os09g11290OsAffx.17643.1.S1_x_at11/119+6265198..6265539Indole-3-acetate beta-glucosyltransferase, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7219.1.S1_at--919--691Chr09:6242468..6242492 (25 bp)
ATGATGGGCCCCATGGGTGTCTCCA
LOC_Os09g11240
Os.7219.1.S1_at--39--6711Chr09:6244463..6244482 (20 bp)
GTTCCGGCTTCAGGCGTGGCACAAA
LOC_Os09g11240
Os.7219.1.S1_at--869--1491Chr09:6244503..6244527 (25 bp)
AGCACCGAGCTGAATTTGAACCTTG
LOC_Os09g11240
Os.7219.1.S1_at--951--2151Chr09:6244549..6244573 (25 bp)
ACAGCGATGCTGATCTGAGCGCAGA
LOC_Os09g11240
Os.7219.1.S1_at--1082--8191Chr09:6244590..6244614 (25 bp)
GGAAGTAACCAACGCTCAGACAACA
LOC_Os09g11240
Os.7219.1.S1_at--885--1791Chr09:6244637..6244661 (25 bp)
ACCGCCCAGTCCTTTGATGATGAGA
LOC_Os09g11240
Os.7219.1.S1_at--510--5451Chr09:6244660..6244684 (25 bp)
GAACGTACGTGGTCATGCGAGGCCA
LOC_Os09g11240
Os.7219.1.S1_at--1027--4611Chr09:6244676..6244700 (25 bp)
GCGAGGCCACTCATGTAATCTTATT
LOC_Os09g11240
Os.7219.1.S1_at--266--151Chr09:6244698..6244722 (25 bp)
ATTAGCATCTATCTCCTAGCTCTTA
LOC_Os09g11240
Os.7219.1.S1_at--750--9991Chr09:6244714..6244738 (25 bp)
TAGCTCTTAGCTTGTGTTAGGCATT
LOC_Os09g11240
Os.7219.1.S1_at--534--1691Chr09:6244773..6244797 (25 bp)
AGCCAGTTGTAGTCTTATTAGCATC
LOC_Os09g11240
Target Sequence 
ATGATGGGCCCCATGGGTGTCTCCAGGGGGAACAAGGTGGTGCTGTTCAGGTGGGCGCCGGTGAACGGCGGCGCGGCCGG
GGGTGGCGGTGGCAGCGGCGACGGCGACGAGTCGGCAGCGGTGGCGGCCACCAGGCGGCGCTTCGTTCCGGCTTCAGGCG
TGGCACAAAATTCTACCAAGAAGAGCGGCAGCACCGAGCTGAATTTGAACCTTGGGTTGGAAGATCCAGATGACGACAGC
GATGCTGATCTGAGCGCAGAAGAGCAACGTGACAGTGGAAGTAACCAACGCTCAGACAACAGACTGAAGAGAAAAGCCTT
TTAACCGCCCAGTCCTTTGATGATGAGAACGTACGTGGTCATGCGAGGCCACTCATGTAATCTTATTAGCATCTATCTCC
TAGCTCTTAGCTTGTGTTAGGCATTAGCAATTGTGTATTGTAGTCCAGAACAATGCATTAGCCAGTTGTAGTCTTATTAG
CATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7219.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis