Browse Element(s) Details


Os.7268.1.S1_at

Description gb:AK111542.1
DB_XREF= gi:37988205
TID=Os.7268.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7268 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013037N20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013037N20, full insert sequence.
FL= gb:AK111542.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g106805/11Coatomer beta subunit, putative
LOC_Os12g187701/11Oxysterol-binding protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g10640OsAffx.18786.1.S1_at11/1111+5830697..5836246Protein kinase domain containing protein, expressed
LOC_Os11g10650OsAffx.7066.1.S1_at11/1111+5837436..5838266hypothetical protein
LOC_Os11g10670OsAffx.18788.1.S1_at11/1111+5847521..5849867hypothetical protein
LOC_Os11g10680Os.7268.1.S1_at5/1111+5855489..5857459Coatomer beta subunit, putative
LOC_Os11g10680Os.12639.1.A1_at1/1111+5855489..5857459Coatomer beta subunit, putative
LOC_Os11g10690NANA11+5858886..5863640Protein kinase domain containing protein, expressed
LOC_Os11g10710Os.12639.1.A1_at11/1111+5868962..5876181Protein kinase domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008202biological_processsteroid metabolism
GO:0030126cellular_componentCOPI vesicle coat
GO:0008142molecular_functionoxysterol binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7268.1.S1_at--333--1231Chr11:5856170..5856194 (25 bp)
AGTTCGTCTGTGGAATGCCACTACC
LOC_Os11g10680
Os.7268.1.S1_at--399--5271Chr11:5856041..5856182 (25 bp)
GAATGCCACTACCTTCAAGCTGGAA
LOC_Os11g10680
Os.7268.1.S1_at--452--1591Chr11:5856000..5856024 (25 bp)
AGCTCGGCAAAGTTACTGCTATAGT
LOC_Os11g10680
Os.7268.1.S1_at--1131--3831Chr11:5855985..5856009 (25 bp)
CTGCTATAGTTTGCTTAAAGGGTTC
LOC_Os11g10680
Os.7268.1.S1_at--946--3151Chr11:5855501..5855525 (25 bp)
AATTCGTCATGGAAAGCCTGCTCCC
LOC_Os11g10680
Os.7268.1.S1_at--540--2551Chr11:5855455..5855479 (25 bp)
AACTGTTGGTGTCAAGTAGGCAAAC
NONE
Os.7268.1.S1_at--374--10451Chr11:5855397..5855421 (25 bp)
TTAGCTCATTCAGAACACCGGTTGA
NONE
Os.7268.1.S1_at--240--331Chr11:5855353..5855377 (25 bp)
ATAACCAAGATCTGAAATTCGGAGG
NONE
Os.7268.1.S1_at--663--7512Chr12:10863418..10863440 (22 bp)
GTGGATATTACCTACATTAAGCATA
LOC_Os12g18770
Os.7268.1.S1_at--356--9611Chr11:5855250..5855274 (25 bp)
TCATCCCTTTTGCAGTCCAGTGTTT
NONE
Os.7268.1.S1_at--927--10271NONE
TTTGCAGTCCAGTGTTTTTTGTTAT
NONE
Target Sequence 
AGTTCGTCTGTGGAATGCCACTACCTTCAAGCTGGAAGGTGTACTGGACTTTGAGCTCGGCAAAGTTACTGCTATAGTTT
GCTTAAAGGGTTCAAAACGAGTTGCGATTGGACATGATGCTGGATTAGTGATTACTGAAATTCGTCATGGAAAGCCTGCT
CCCNGCAACAGATAAGGATATTCAAACTGTTGGTGTCAAGTAGGCAAACTGGAGTGGAGACAGATAATGGTAGTGCGCTT
AATTAGCTCATTCAGAACACCGGTTGAACAATGTTTTGACACTTAGATAACCAAGATCTGAAATTCGGAGGTAACATGGG
AAAAAAAAATTTGTAATCTGATGTAGTGGATATTACCTACATTAAGCATACAAAGTTTGTTTTTTTTTCTCATCCCTTTT
GCAGTCCAGTGTTTTTTGTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7268.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis