Browse Element(s) Details


Os.7279.1.S1_at

Description gb:AK067230.1
DB_XREF= gi:32977248
TID=Os.7279.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7279 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative transposon protein (OSJNBa0034E15.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013096B09, full insert sequence.
FL= gb:AK067230.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2281011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g118705/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g22760OsAffx.12861.4.S1_at9/1112+12840719..12843923hypothetical protein
LOC_Os12g22760OsAffx.12861.4.S1_x_at9/1112+12840719..12843923hypothetical protein
LOC_Os12g22770OsAffx.7664.1.S1_s_at11/1112+12845213..12847529hypothetical protein
LOC_Os12g22770OsAffx.7664.1.S1_x_at8/1112+12845213..12847529hypothetical protein
LOC_Os12g22770OsAffx.7664.1.S1_at6/1112+12845213..12847529hypothetical protein
LOC_Os12g22770OsAffx.10967.1.S1_x_at4/1112+12845213..12847529hypothetical protein
LOC_Os12g22770Os.8753.2.S1_at2/1112+12845213..12847529hypothetical protein
LOC_Os12g22770Os.8753.4.S1_x_at1/1112+12845213..12847529hypothetical protein
LOC_Os12g22780OsAffx.31835.1.S1_at11/1112+12850448..12851431hypothetical protein
LOC_Os12g22790NANA12+12860537..12860836hypothetical protein
LOC_Os12g22800Os.54004.1.S1_at11/1112+12861763..12863518expressed protein
LOC_Os12g22810Os.7279.1.S1_at11/1112+12865555..12876253transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g22810Os.7279.2.S1_at11/1112+12865555..12876253transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g22810Os.7279.2.S1_x_at11/1112+12865555..12876253transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g22810Os.7279.3.S1_at8/1112+12865555..12876253transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g22820NANA12+12882112..12883317retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g22830NANA12+12883810..12886366retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g22850NANA12+12896882..12897298hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7279.1.S1_at--1024--7572Chr12:12866551..12866575 (25 bp)
GGGCTTGAGTGCTGTTCGAATGAAC
LOC_Os12g22810
Os.7279.1.S1_at--261--5412Chr12:12866572..12866596 (25 bp)
GAACCAGTTGGTGTCGCGGAAGTAC
LOC_Os12g22810
Os.7279.1.S1_at--187--9352Chr12:12866585..12866609 (25 bp)
TCGCGGAAGTACATGGGCTGAATTT
LOC_Os12g22810
Os.7279.1.S1_at--1110--8312Chr12:12866600..12866621 (22 bp)
GGCTGAATTTATTAACCAAGGTCAT
LOC_Os12g22810
Os.7279.1.S1_at--1041--5232Chr12:12866788..12866812 (25 bp)
GAACTTTACTTGAGGAAAACAGCCA
LOC_Os12g22810
Os.7279.1.S1_at--396--3392Chr12:12867128..12867152 (25 bp)
CAGAGGTGCACCATGGATAAACAGT
LOC_Os12g22810
Os.7279.1.S1_at--31--6252Chr12:12867154..12867268 (25 bp)
GATGGATAAGCCTAGGCACTCTAGA
LOC_Os12g22810
Os.7279.1.S1_at--853--5212Chr12:12867305..12867329 (25 bp)
GAATTTAGTTCAGCAGTAGGCAACA
LOC_Os12g22810
Os.7279.1.S1_at--575--4532Chr12:12867339..12867363 (25 bp)
GCCCCTGTAAAAAATGTGCTGGTTC
LOC_Os12g22810
Os.7279.1.S1_at--284--792Chr12:12867403..12867427 (25 bp)
ATGTGAGGGCTTTCTACGAGGGTAC
LOC_Os12g22810
Os.7279.1.S1_at--404--6132Chr12:12867420..12867444 (25 bp)
GAGGGTACAAACCATTGATGTTTCA
LOC_Os12g22810
Target Sequence 
GGGCTTGAGTGCTGTTCGAATGAACCAGTTGGTGTCGCGGAAGTACATGGGCTGAATTTATTAACCAAGGTCATCAACAA
GGCAAGCATAAGAGGACCAAGGGGATCTCCATGGTAGAAGTTTGAACTTTACTTGAGGAAAACAGCCATATAGCTGGCAA
CAAGCAAACACCAGAGGTGCACCATGGATAAACAGTGGATGGATAAGCCTAGGCACTCTAGAGAATATTCAGAAGGGCTG
GACATATTCCTACAACATGAATTTAGTTCAGCAGTAGGCAACAAAATACAATGCCCCTGTAAAAAATGTGCTGGTTCATT
CTGGAGAGATGAAAGCGAAGTTCATGAGCATTTGATATGTGAGGGCTTTCTACGAGGGTACAAACCATTGATGTTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7279.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis