Browse Element(s) Details


Os.7279.2.S1_x_at

Description gb:AK064576.1
DB_XREF= gi:32974594
TID=Os.7279.2
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7279 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative transposon protein (OSJNBa0034E15.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-112-E07, full insert sequence.
FL= gb:AK064576.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2281011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g118704/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g22760OsAffx.12861.4.S1_at9/1112+12840719..12843923hypothetical protein
LOC_Os12g22760OsAffx.12861.4.S1_x_at9/1112+12840719..12843923hypothetical protein
LOC_Os12g22770OsAffx.7664.1.S1_s_at11/1112+12845213..12847529hypothetical protein
LOC_Os12g22770OsAffx.7664.1.S1_x_at8/1112+12845213..12847529hypothetical protein
LOC_Os12g22770OsAffx.7664.1.S1_at6/1112+12845213..12847529hypothetical protein
LOC_Os12g22770OsAffx.10967.1.S1_x_at4/1112+12845213..12847529hypothetical protein
LOC_Os12g22770Os.8753.2.S1_at2/1112+12845213..12847529hypothetical protein
LOC_Os12g22770Os.8753.4.S1_x_at1/1112+12845213..12847529hypothetical protein
LOC_Os12g22780OsAffx.31835.1.S1_at11/1112+12850448..12851431hypothetical protein
LOC_Os12g22790NANA12+12860537..12860836hypothetical protein
LOC_Os12g22800Os.54004.1.S1_at11/1112+12861763..12863518expressed protein
LOC_Os12g22810Os.7279.1.S1_at11/1112+12865555..12876253transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g22810Os.7279.2.S1_at11/1112+12865555..12876253transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g22810Os.7279.2.S1_x_at11/1112+12865555..12876253transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g22810Os.7279.3.S1_at8/1112+12865555..12876253transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g22820NANA12+12882112..12883317retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g22830NANA12+12883810..12886366retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g22850NANA12+12896882..12897298hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7279.2.S1_x_at--349--672Chr12:12873346..12873370 (25 bp)
ATGAAGTTGTTGTCAATGTCGTGCT
LOC_Os12g22810
Os.7279.2.S1_x_at--550--52Chr12:12873383..12873407 (25 bp)
ATTGCTTCCTCGTCCATATGATGAT
LOC_Os12g22810
Os.7279.2.S1_x_at--942--4912Chr12:12873386..12873410 (25 bp)
GCTTCCTCGTCCATATGATGATATG
LOC_Os12g22810
Os.7279.2.S1_x_at--623--4872Chr12:12873593..12873617 (25 bp)
GCTATGTCCAAAAGTGCTAACTCCA
LOC_Os12g22810
Os.7279.2.S1_x_at--797--8213Chr12:12874334..12874358 (25 bp)
GGAATTTGGTGTCTACTTCCACTCT
LOC_Os12g22810
Os.7279.2.S1_x_at--883--213Chr12:12874337..12874361 (25 bp)
ATTTGGTGTCTACTTCCACTCTTTT
LOC_Os12g22810
Os.7279.2.S1_x_at--151--8732Chr12:12874343..12874367 (25 bp)
TGTCTACTTCCACTCTTTTGCTAGT
LOC_Os12g22810
Os.7279.2.S1_x_at--212--2072Chr12:12874348..12874372 (25 bp)
ACTTCCACTCTTTTGCTAGTTGCAA
LOC_Os12g22810
Os.7279.2.S1_x_at--509--9212Chr12:12874351..12874375 (25 bp)
TCCACTCTTTTGCTAGTTGCAATTA
LOC_Os12g22810
Os.7279.2.S1_x_at--931--10712Chr12:12874360..12874384 (25 bp)
TTGCTAGTTGCAATTATCAGTAATT
LOC_Os12g22810
Os.7279.2.S1_x_at--25--413Chr12:12874375..12874399 (25 bp)
ATCAGTAATTTGCTATTGAATTGGA
LOC_Os12g22810
Target Sequence 
ATGAAGTTGTTGTCAATGTCGTGCTNAAAAGAGANGCATTGCTTCCTCGTCCATATGATGATATGCANACTATGNCNNNN
GNNNNNNANNNNNNCNTNNNNNNNNNANNNANNANGTNNNNNNTNANNNNNANNNNNGCTATGTCCAAAAGTGCTAACTC
CAAAAGTGCANGGGGTTGNTCAGTCTGGATAACAAAATGCTGGCTGCAAANGGGAGTATTTTNGGTCAAATGGNGGNCTG
ATGAAAANNTACCNANCTTANGGTAGNNGCNCTTTTNANAAANCCATGTAACTTGTATNCCTTTTNGTAGTAAACACTGN
CTTGNCCCNTTGATCGNTTCAACAACTGNTGNTTAGAAGCATGTTNNGNNTNNTNNNNNGNANNNNNNNNGNANCTNNNN
NNNCAAACTGATGTTAGAAGCATGTGAGCTTTTGGAGTAATGANTCGTAGTNGACATGANCCTATGATAGGGCAGCAATA
TACATGTTGATGTAATNTTCGGGGCTAATGTCTGGAATTTGGTGTCTACTTCCACTCTTTTGCTAGTTGCAATTATCAGT
AATTTGCTATTGAATTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7279.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis