Browse Element(s) Details


Os.7326.1.S1_at

Description gb:CF324972
DB_XREF= gi:33798229
DB_XREF=JMT1--01-P12.g1
CLONE=JMT1--01-P12
TID=Os.7326.1
CNT=13
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.7326 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_564504.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3766011/11protein phosphatase 2C, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g37600Os.12776.1.S1_at11/114+22143167..22148131Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os04g37619Os.1605.1.S1_at10/114+22150569..22157739Zeaxanthin epoxidase, chloroplast precursor, putative, expressed
LOC_Os04g37630Os.53639.2.A1_at11/114+22157961..22168826expressed protein
LOC_Os04g37630Os.54686.1.S1_at10/114+22157961..22168826expressed protein
LOC_Os04g37630Os.48676.1.S1_at10/114+22157961..22168826expressed protein
LOC_Os04g37630Os.49908.2.A1_at1/114+22157961..22168826expressed protein
LOC_Os04g37640Os.57107.1.S1_at10/114+22162267..22164458Xyloglucan fucosyltransferase family protein, expressed
LOC_Os04g37650Os.53639.1.S1_at11/114+22166287..22168634Xyloglucan fucosyltransferase family protein, expressed
LOC_Os04g37660Os.7326.1.S1_at11/114+22170230..22174758protein phosphatase 2C, putative, expressed
LOC_Os04g37670Os.14998.1.S1_at11/114+22177458..22182727expressed protein
LOC_Os04g37680NANA4+22192829..22193782esterase, putative
LOC_Os04g37690Os.7792.1.S1_at11/114+22195425..22200084RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7326.1.S1_at--616--3591Chr04:22170792..22170816 (25 bp)
CATTAGTTGCATTTCCCTTGGGAGT
LOC_Os04g37660
Os.7326.1.S1_at--965--10831Chr04:22170775..22170799 (25 bp)
TTGGGAGTCTTTCAGTGGTTCCTCT
LOC_Os04g37660
Os.7326.1.S1_at--1034--6691Chr04:22170758..22170782 (25 bp)
GTTCCTCTGCTCATGGATTGGTATG
LOC_Os04g37660
Os.7326.1.S1_at--296--7771Chr04:22170692..22170716 (25 bp)
GGTGACTATCGGCTTATACATTACT
LOC_Os04g37660
Os.7326.1.S1_at--113--6891Chr04:22170635..22170659 (25 bp)
GTATCTTACCGAGCTACTGTCAAGT
LOC_Os04g37660
Os.7326.1.S1_at--542--8451Chr04:22170572..22170596 (25 bp)
GGCCAAAGACCTGCGAATCAAGAAT
LOC_Os04g37660
Os.7326.1.S1_at--810--5271Chr04:22170551..22170575 (25 bp)
GAATGACCGATCTAAGGCTGATACA
LOC_Os04g37660
Os.7326.1.S1_at--81--10051Chr04:22170506..22170530 (25 bp)
TAGAGGTGCGTCAAATCGCCGCGGC
LOC_Os04g37660
Os.7326.1.S1_at--384--171Chr04:22170384..22170408 (25 bp)
ATTTTCACCATTTCATCCTATTCTA
LOC_Os04g37660
Os.7326.1.S1_at--633--6571Chr04:22170331..22170355 (25 bp)
GATTCTTGCAAACAGCTATCCTCAC
LOC_Os04g37660
Os.7326.1.S1_at--1001--3691Chr04:22170316..22170340 (25 bp)
CTATCCTCACTGTTATCCTCTTTAA
LOC_Os04g37660
Target Sequence 
CATTAGTTGCATTTCCCTTGGGAGTCTTTCAGTGGTTCCTCTGCTCATGGATTGGTATGAAATAGGATTATATATTTATA
GAATGGTACAGCTGTGACAAGGTGACTATCGGCTTATACATTACTGAAATNTGAAGACGCAACACATTGTGTAGCAAGTA
TCTTACCGAGCTACTGTCAAGTCAAAATCTCCAGTGGGGCTTNTGGCAGCGGCACATACAGGCCAAAGACCTGCGAATCA
AGAATGACCGATCTAAGGCTGATACATGTGTAAATTATTCATCATATAGAGGTGCGTCAAATCGCCGCGGCTTTATATTT
NTCAGCTAGGACTAGGTATGTATTNTGAAATTCGTTTTGGGGAGAAATTACATTATTAAGGTCAAAGTAACCCGTTTTCC
TGTTAGAAATTTTCACCATTTCATCCTATTCTAGTTTCAACAGTGTACTTATATCCAAGGAGATTCTTGCAAACAGCTAT
CCTCACTGTTATCCTCTTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7326.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis