Browse Element(s) Details


Os.7353.1.S1_at

Description gb:AK063363.1
DB_XREF= gi:32973381
TID=Os.7353.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7353 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-114-D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-114-D04, full insert sequence.
FL= gb:AK063363.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3649011/11HEC/Ndc80p family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g36470NANA8+22890353..22890631transposon protein, putative, unclassified
LOC_Os08g36480Os.4717.1.S1_at11/118+22900388..22905751Nitrate reductase 1, putative, expressed
LOC_Os08g36490OsAffx.29558.1.S1_x_at11/118+22906774..22911694HEC/Ndc80p family protein, expressed
LOC_Os08g36490Os.7353.1.S1_at11/118+22906774..22911694HEC/Ndc80p family protein, expressed
LOC_Os08g36490OsAffx.14369.1.A1_at1/118+22906774..22911694HEC/Ndc80p family protein, expressed
LOC_Os08g36500Os.4717.1.S1_at9/118+22918579..22922733Nitrate reductase 1, putative, expressed
LOC_Os08g36500Os.46481.2.S1_x_at1/118+22918579..22922733Nitrate reductase 1, putative, expressed
LOC_Os08g36510OsAffx.29559.1.S1_at11/118+22926023..22927234hypothetical protein
LOC_Os08g36520OsAffx.29561.2.S1_at11/118+22929767..22930384Aspartic proteinase nepenthesin-1 precursor, putative
LOC_Os08g36520OsAffx.29561.1.S1_x_at1/118+22929767..22930384Aspartic proteinase nepenthesin-1 precursor, putative
LOC_Os08g36530OsAffx.29561.1.S1_x_at11/118+22932792..22934138Eukaryotic aspartyl protease family protein
LOC_Os08g36530OsAffx.29561.1.S1_at11/118+22932792..22934138Eukaryotic aspartyl protease family protein
LOC_Os08g36540Os.55778.1.S1_at11/118+22936461..22937758Eukaryotic aspartyl protease family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7353.1.S1_at--23--3771Chr08:22911490..22911514 (25 bp)
CTCTTCACGGAAGTGTTAGCTCCCA
LOC_Os08g36490
Os.7353.1.S1_at--164--5331Chr08:22911499..22911523 (25 bp)
GAAGTGTTAGCTCCCAAGTGATCTC
LOC_Os08g36490
Os.7353.1.S1_at--499--10451Chr08:22911505..22911529 (25 bp)
TTAGCTCCCAAGTGATCTCTTCCTT
LOC_Os08g36490
Os.7353.1.S1_at--6--9251Chr08:22911525..22911549 (25 bp)
TCCTTCCTACGCCTGAGATATTTAT
LOC_Os08g36490
Os.7353.1.S1_at--804--6511Chr08:22911541..22911565 (25 bp)
GATATTTATACCTCTTGGAGCTCTT
LOC_Os08g36490
Os.7353.1.S1_at--1100--10851Chr08:22911555..22911579 (25 bp)
TTGGAGCTCTTGTACGCATGTGCCA
LOC_Os08g36490
Os.7353.1.S1_at--338--6991Chr08:22911566..22911590 (25 bp)
GTACGCATGTGCCATCCTGTTAATA
LOC_Os08g36490
Os.7353.1.S1_at--64--5011Chr08:22911570..22911594 (25 bp)
GCATGTGCCATCCTGTTAATATAAA
LOC_Os08g36490
Os.7353.1.S1_at--960--7751Chr08:22911598..22911622 (25 bp)
GGTGAGTATTCCTTAGATTGCAATG
LOC_Os08g36490
Os.7353.1.S1_at--1044--6511Chr08:22911630..22911654 (25 bp)
GATATTATTTGCTTTCCAACTCTTG
LOC_Os08g36490
Os.7353.1.S1_at--306--4891Chr08:22911640..22911664 (25 bp)
GCTTTCCAACTCTTGTGCATGTTGA
LOC_Os08g36490
Target Sequence 
CTCTTCACGGAAGTGTTAGCTCCCAAGTGATCTCTTCCTTCCTACGCCTGAGATATTTATACCTCTTGGAGCTCTTGTAC
GCATGTGCCATCCTGTTAATATAAACTAGGTGAGTATTCCTTAGATTGCAATGGAAATAGGATATTATTTGCTTTCCAAC
TCTTGTGCATGTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7353.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis