Browse Element(s) Details


Os.7355.1.S1_at

Description gb:AK121870.1
DB_XREF= gi:37991493
TID=Os.7355.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7355 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033103P10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033103P10, full insert sequence.
FL= gb:AK121870.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1352011/11Auxin-responsive protein IAA26, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13510Os.7123.3.S1_at11/112+7220338..7224467Leucine Rich Repeat family protein, expressed
LOC_Os02g13510Os.7123.2.S1_x_at4/112+7220338..7224467Leucine Rich Repeat family protein, expressed
LOC_Os02g13520Os.7355.1.S1_at11/112+7245053..7248668Auxin-responsive protein IAA26, putative, expressed
LOC_Os02g13530Os.10120.3.S1_at11/112+7258550..726038040S ribosomal protein S24, putative, expressed
LOC_Os02g13540NANA2+7260978..7261178hypothetical protein
LOC_Os02g13550OsAffx.24227.1.S1_at10/112+7263069..7263566hypothetical protein
LOC_Os02g13560Os.50292.1.S1_at11/112+7273050..7278242Sugar transporter type 2a, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7355.1.S1_at--106--8631Chr02:7246194..7246218 (25 bp)
TGGTGTCCCTATTGGTAGAAAGATC
LOC_Os02g13520
Os.7355.1.S1_at--97--2811Chr02:7246175..7246199 (25 bp)
AAGATCGATCTGAATGCTTTTGATA
LOC_Os02g13520
Os.7355.1.S1_at--916--10111Chr02:7246148..7246172 (25 bp)
TATGAGAAGCTTTCTTTAGCGGTTG
LOC_Os02g13520
Os.7355.1.S1_at--219--9691Chr02:7245830..7245854 (25 bp)
TCACTGCTGGAGCAAAGGACTGCCA
LOC_Os02g13520
Os.7355.1.S1_at--734--3631Chr02:7245328..7245444 (25 bp)
CTTCATCTCTAATAACCTCTGGACG
LOC_Os02g13520
Os.7355.1.S1_at--824--10471Chr02:7245157..7245181 (25 bp)
TTCCTGTTCCTACTTAACCAACTTG
LOC_Os02g13520
Os.7355.1.S1_at--274--9791Chr02:7245143..7245167 (25 bp)
TAACCAACTTGCTTCCTTCTGTTTA
LOC_Os02g13520
Os.7355.1.S1_at--761--4911Chr02:7245133..7245157 (25 bp)
GCTTCCTTCTGTTTAAGACACTTGT
LOC_Os02g13520
Os.7355.1.S1_at--977--6091Chr02:7245101..7245125 (25 bp)
GAGTGCAATTTGACATGACCATCAT
LOC_Os02g13520
Os.7355.1.S1_at--219--5851Chr02:7245085..7245109 (25 bp)
GACCATCATGTAAATGTTCAGCTAA
LOC_Os02g13520
Os.7355.1.S1_at--1041--3011Chr02:7245061..7245085 (25 bp)
AATGCTCTACATTTATGCAGTTTAT
LOC_Os02g13520
Target Sequence 
TGGTGTCCCTATTGGTAGAAAGATCGATCTGAATGCTTTTGATAGCTATGAGAAGCTTTCTTTAGCGGTTGACAAGCTAT
TCCGAGGCCTTCTTGCAGCCCAAAGNGACCCCCTCACTGCTGGAGCAAAGGACTGCCAGCAGGAAGATGTGGCAATATCT
GGCTTGCTAGATGGANCTGGGGAGTACACTTTGGTTTATGAGGATTATGAAGGCGNCAAGGTGCTTNTTGGAGATGTGCC
ATGGGGGATGTTTGTTTCTTCNAGTTAAGAGACTGAGAGTACTGAAGACATCTGACCTCTCTTCATCTCTAATAACCTCT
GGACGGAAAAGAACAGCTGCTGAGTGTTGACCTTCTTTTTTGGAGCTGCTTTGACACATTCAGTGACCTGCTGTGAAGAA
GAATATGATCTTCTGAGCTTGTATCATCGTCTCTTTCTCTCAATGTCTTGCTGTGCTGATCTTTTGGGGTTTTCCTGTTC
CTACTTAACCAACTTGCTTCCTTCTGTTTAAGACACTTGTGTGAAGTGAGTGCAATTTGACATGACCATCATGTAAATGT
TCAGCTAAATGCTCTACATTTATGCAGTTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7355.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis