Browse Element(s) Details


Os.7401.1.S1_a_at

Description gb:AK120460.1
DB_XREF= gi:37990083
TID=Os.7401.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.7401 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative transposase (OSJNBa0010I09.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013106N05, full insert sequence.
FL= gb:AK105528.1 gb:AK120460.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5663011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56572NANA3+32164105..32168709retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g56580Os.17090.1.S1_at11/113+32173258..32175381NAC-domain containing protein 9, putative, expressed
LOC_Os03g56580Os.51926.1.S1_x_at1/113+32173258..32175381NAC-domain containing protein 9, putative, expressed
LOC_Os03g56590Os.45014.1.S1_at8/113+32177135..32179764expressed protein
LOC_Os03g56600Os.15920.1.S1_at1/113+32181481..32182113hypothetical protein
LOC_Os03g56610Os.15813.1.S1_at11/113+32183394..32185758expressed protein
LOC_Os03g56620Os.35191.2.S1_x_at11/113+32187851..32190559expressed protein
LOC_Os03g56630Os.7401.1.S2_at11/113+32189568..32194089transposon protein, putative, unclassified, expressed
LOC_Os03g56630Os.7401.1.S1_a_at11/113+32189568..32194089transposon protein, putative, unclassified, expressed
LOC_Os03g56640OsAffx.13508.1.S1_at11/113+32197923..32198531transposon protein, putative, unclassified
LOC_Os03g56660Os.23301.1.S1_at11/113+32206814..32212187expressed protein
LOC_Os03g56660Os.48020.1.S1_x_at11/113+32206814..32212187expressed protein
LOC_Os03g56660Os.48020.1.S1_at10/113+32206814..32212187expressed protein
LOC_Os03g56670Os.12283.1.S1_at11/113+32211866..32213110Photosystem I reaction center subunit III, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7401.1.S1_a_at--238--6951Chr03:32192065..32192089 (25 bp)
GTAGATACGCGTCGGCAGCAGCAAA
LOC_Os03g56630
Os.7401.1.S1_a_at--787--3391Chr03:32192050..32192074 (25 bp)
CAGCAGCAAAGTCCTCTTCAATCAA
LOC_Os03g56630
Os.7401.1.S1_a_at--173--4271Chr03:32191915..32191939 (25 bp)
CCTGAGGAGGCTGAAGTTCCGCTTA
LOC_Os03g56630
Os.7401.1.S1_a_at--1140--5331Chr03:32191903..32191927 (25 bp)
GAAGTTCCGCTTAGGGTTGATCCTC
LOC_Os03g56630
Os.7401.1.S1_a_at--960--2531Chr03:32191844..32191868 (25 bp)
AACTCCAACCAGTCAATTTCTTGCA
LOC_Os03g56630
Os.7401.1.S1_a_at--644--5011Chr03:32191666..32191689 (24 bp)
GCAGGCACCGTATATTGCACAGCAA
LOC_Os03g56630
Os.7401.1.S1_a_at--344--9031Chr03:32191651..32191675 (25 bp)
TGCACAGCAATTCGGACTTAGCTCT
LOC_Os03g56630
Os.7401.1.S1_a_at--315--2051Chr03:32191636..32191660 (25 bp)
ACTTAGCTCTCTTCAGGGATTTCCT
LOC_Os03g56630
Os.7401.1.S1_a_at--949--7931Chr03:32191620..32191644 (25 bp)
GGATTTCCTGGCATATCACCATTTG
LOC_Os03g56630
Os.7401.1.S1_a_at--218--8651Chr03:32191506..32191526 (21 bp)
TGGGCAGTTGCAGGAACCAGCACCT
LOC_Os03g56630
Os.7401.1.S1_a_at--117--2151Chr03:32191458..32191482 (25 bp)
ACAGCAACCACCCTTTCATAGCGGT
LOC_Os03g56630
Target Sequence 
GTAGATACGCGTCGGCAGCAGCAAAGTCCTCTTCAATCAAATAAGAAGAAAAAGGGTAGACAAGGTCTACCGGANCCTGA
GGAGGCTGAAGTTCCGCTTAGGGTTGATCCTCCTACAATATCAAATGACATTCCAAATCATCTGAGAACTCCAACCAGTC
AATTTCTTGCAACAAGCCATATAATGCAGGCACCGTATATTGCACAGCAATTCGGACTTAGCTCTCTTCAGGGATTTCCT
GGCATATCACCATTTGGGCAGTTGCAGGAACCAGCACCTGNTCCTCTCCAGCAACCTCATNTACAGCAACCACCCTTTCA
TAGCGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7401.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis