Browse Element(s) Details


Os.7434.1.S1_at

Description gb:AK103462.1
DB_XREF= gi:32988671
TID=Os.7434.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7434 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-207-B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033129M10, full insert sequence.
FL= gb:AK103462.1 gb:AK106087.1 gb:AK120852.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1001011/11oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g09969NANA4+5344752..5344988NA
LOC_Os04g09980Os.35344.3.S1_x_at11/114+5346825..5352543transposon protein, putative, Mutator sub-class
LOC_Os04g09980Os.35344.18.S1_x_at8/114+5346825..5352543transposon protein, putative, Mutator sub-class
LOC_Os04g09980OsAffx.22940.5.S1_x_at3/114+5346825..5352543transposon protein, putative, Mutator sub-class
LOC_Os04g09990OsAffx.25948.1.S1_at11/114+5357271..5359192hypothetical protein
LOC_Os04g10000NANA4+5360317..5361507oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g10010Os.7434.1.S1_at11/114+5365731..5367224oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g10020Os.47463.1.S1_x_at6/114+5368855..5372552transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g10020Os.14491.2.S1_x_at4/114+5368855..5372552transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g10030NANA4+5375935..5379267transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g10040OsAffx.8939.1.S1_x_at5/114+5382592..5384370hypothetical protein
LOC_Os04g10040OsAffx.8939.1.S1_at5/114+5382592..5384370hypothetical protein
LOC_Os04g10040OsAffx.1436.1.S1_x_at1/114+5382592..5384370hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009408biological_processresponse to heat
GO:0009688biological_processabscisic acid biosynthesis
GO:0010182biological_processsugar mediated signaling
GO:0005829cellular_componentcytosol
GO:0004022molecular_functionalcohol dehydrogenase activity
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7434.1.S1_at--1052--10811Chr04:5366101..5366125 (25 bp)
TTGTCCGTCGTCAACAGCAGCTTTG
LOC_Os04g10010
Os.7434.1.S1_at--25--1572Chr04:5366083..5366107 (25 bp)
AGCTTTGGTTTCTTCAGGGACTGAA
LOC_Os04g10010
Os.7434.1.S1_at--157--6511Chr04:5366055..5366079 (25 bp)
GATTTGGGACCAGTCGTCAGTCGAT
LOC_Os04g10010
Os.7434.1.S1_at--1150--7191Chr04:5366036..5366060 (25 bp)
GTCGATCGACAATACTACATTACGT
LOC_Os04g10010
Os.7434.1.S1_at--302--3071Chr04:5365973..5365997 (25 bp)
AATAAACTAGCATCCATGGTTCCCC
LOC_Os04g10010
Os.7434.1.S1_at--921--811Chr04:5365958..5365982 (25 bp)
ATGGTTCCCCGCTTGTTTGCGAGGA
LOC_Os04g10010
Os.7434.1.S1_at--385--10711Chr04:5365942..5365966 (25 bp)
TTGCGAGGACATTCCATCGCTAGCT
LOC_Os04g10010
Os.7434.1.S1_at--743--531Chr04:5365927..5365951 (25 bp)
ATCGCTAGCTAGATTCTGTCTTGTA
LOC_Os04g10010
Os.7434.1.S1_at--518--7711Chr04:5365796..5365820 (25 bp)
GGGTGCCACTTATGTGACATGTCAC
LOC_Os04g10010
Os.7434.1.S1_at--586--1391Chr04:5365769..5365793 (25 bp)
AGACGCCTACATGTCAATTGGCTAA
LOC_Os04g10010
Os.7434.1.S1_at--931--11Chr04:5365753..5365777 (25 bp)
ATTGGCTAACAGGTTCAGTCATACA
LOC_Os04g10010
Target Sequence 
TTGTCCGTCGTCAACAGCAGCTTTGGTTTCTTCAGGGACTGAAAATGATTTGGGACCAGTCGTCAGTCGATCGACAATAC
TACATTACGTCGTTATATATGGTTGATGTTATTTGTGTTGCATTCTTGAATAAACTAGCATCCATGGTTCCCCGCTTGTT
TGCGAGGACATTCCATCGCTAGCTAGATTCTGTCTTGTATTTGTATTTGTTGGAAGAGTGAAATACATGCATGAACGGTG
CTTAAACTATTCAGGTTTCCTGAACTCNAAAATTAAATTTGTATTTTTATCCTCAAATTTATATTGGGTGCCACTTATGT
GACATGTCACAAAGACGCCTACATGTCAATTGGCTAACAGGTTCAGTCATACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7434.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis