Browse Element(s) Details


Os.7445.1.S1_at

Description gb:AK071044.1
DB_XREF= gi:32981067
TID=Os.7445.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7445 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023081F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023081F09, full insert sequence.
FL= gb:AK071044.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3948911/11amino acid transporter family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39440Os.8483.1.S1_at11/114+23273840..23276266Ras-related protein Rab-2-B, putative, expressed
LOC_Os04g39450Os.34697.1.S1_at11/114+23280931..23283511Uncharacterised protein family containing protein, expressed
LOC_Os04g39460OsAffx.14204.1.S1_at11/114+23287746..23290532NB-ARC domain containing protein, expressed
LOC_Os04g39470OsAffx.14205.1.S1_at11/114+23291540..23292855Myb-like DNA-binding domain containing protein, expressed
LOC_Os04g39489Os.7445.1.S1_at11/114+23293688..23303872amino acid transporter family protein, putative, expressed
LOC_Os04g39510OsAffx.26390.1.S1_at11/114+23305096..23306172hypothetical protein
LOC_Os04g39520OsAffx.4030.1.S1_at11/114+23308226..23313262Zinc finger, C2H2 type family protein
LOC_Os04g39520OsAffx.6586.1.S1_at1/114+23308226..23313262Zinc finger, C2H2 type family protein
LOC_Os04g39530NANA4+23316323..23318391transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g39540Os.23802.1.A1_at10/114+23324866..23327760expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0015800biological_processacidic amino acid transport
GO:0015802biological_processbasic amino acid transport
GO:0015804biological_processneutral amino acid transport
GO:0015810biological_processL-aspartate transport
GO:0015827biological_processL-tryptophan transport
GO:0005887cellular_componentintegral to plasma membrane
GO:0016020cellular_componentmembrane
GO:0015171molecular_functionamino acid transporter activity
GO:0015172molecular_functionacidic amino acid transporter activity
GO:0015175molecular_functionneutral amino acid transporter activity
GO:0015359molecular_functionamino acid permease activity
GO:0015399molecular_functionprimary active transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7445.1.S1_at--144--7811Chr04:23294131..23294155 (25 bp)
GGTCGTGCTGCAGTCGTTCAGCGTC
LOC_Os04g39489
Os.7445.1.S1_at--491--1091Chr04:23294063..23294087 (25 bp)
AGGGCCTCATCAGCCAGAAGCTAGG
LOC_Os04g39489
Os.7445.1.S1_at--556--6531Chr04:23294033..23294057 (25 bp)
GATTTAGCCTAGCATCCTGAATTTC
LOC_Os04g39489
Os.7445.1.S1_at--118--6531Chr04:23294007..23294031 (25 bp)
GATTTGCTTTTTCTTTGTGTAACCG
LOC_Os04g39489
Os.7445.1.S1_at--331--3011Chr04:23293970..23293994 (25 bp)
AATGCATTTGGTGGTCGTGTGTTGT
LOC_Os04g39489
Os.7445.1.S1_at--447--5891Chr04:23293926..23293950 (25 bp)
GAGCTTTGTCCCTGGTGAATGGCGC
LOC_Os04g39489
Os.7445.1.S1_at--577--7351Chr04:23293912..23293936 (25 bp)
GTGAATGGCGCGATGAACTCATGAA
LOC_Os04g39489
Os.7445.1.S1_at--487--3191Chr04:23293887..23293911 (25 bp)
CAATAGCATAGTGGTGGTGGTACAT
LOC_Os04g39489
Os.7445.1.S1_at--704--6131Chr04:23293845..23293869 (25 bp)
GAGGGTGGTGGCACTCTGTTTTTCA
LOC_Os04g39489
Os.7445.1.S1_at--687--5971Chr04:23293798..23293822 (25 bp)
GAGAAACTGCTCCTATATATGTACA
LOC_Os04g39489
Os.7445.1.S1_at--250--8171Chr04:23293743..23293767 (25 bp)
GGAACGGTGAAAGGAACCTGCTCTT
LOC_Os04g39489
Target Sequence 
GGTCGTGCTGCAGTCGTTCAGCGTCCTCTGCCTCCTCGTCAGCGCCTTCGCGCTCGTCGGCTCCATCCAGGGCCTCATCA
GCCAGAAGCTAGGCTAAAGATTTAGCCTAGCATCCTGAATTTCGGATTTGCTTTTTCTTTGTGTAACCGTAATGGGATGA
GAATGCATTTGGTGGTCGTGTGTTGTTTGTAACAACTGGGGAGCGGAGCTTTGTCCCTGGTGAATGGCGCGATGAACTCA
TGAACAATAGCATAGTGGTGGTGGTACATTGTGTCTGCAGGGGTCAGAGGGTGGTGGCACTCTGTTTTTCAGTGCCTTTC
CTCCTGTGCTGCAGAGAAACTGCTCCTATATATGTACAGAATGTCGTCATATTATTGCCATGATACTTGGAACGGTGAAA
GGAACCTGCTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7445.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis