Browse Element(s) Details


Os.7446.1.S1_s_at

Description gb:AU101104
DB_XREF= gi:9865354
DB_XREF=AU101104
CLONE=E0842
TID=Os.7446.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.7446 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4935011/11Plastocyanin-like domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49310Os.49207.1.S1_at11/112+30129487..30132803Protein kinase G11A, putative, expressed
LOC_Os02g49320Os.9750.1.S1_at11/112+30133788..30137583sucrase, putative, expressed
LOC_Os02g49326Os.27449.1.S1_at11/112+30138391..30142823SET domain-containing protein, putative, expressed
LOC_Os02g49332OsAffx.3008.1.S1_at11/112+30142989..30147946cellulose synthase-like protein CslE, putative, expressed
LOC_Os02g49332Os.20406.3.S1_x_at11/112+30142989..30147946cellulose synthase-like protein CslE, putative, expressed
LOC_Os02g49332Os.20406.1.S1_a_at11/112+30142989..30147946cellulose synthase-like protein CslE, putative, expressed
LOC_Os02g49332Os.20406.4.S1_at9/112+30142989..30147946cellulose synthase-like protein CslE, putative, expressed
LOC_Os02g49340OsAffx.3009.1.S1_at11/112+30149093..30150461nitrate-induced NOI protein, putative, expressed
LOC_Os02g49350OsAffx.12563.1.S1_at11/112+30151732..30152756Plastocyanin-like domain containing protein, expressed
LOC_Os02g49350Os.7446.1.S1_s_at11/112+30151732..30152756Plastocyanin-like domain containing protein, expressed
LOC_Os02g49360Os.14816.1.S1_at11/112+30153349..30155848tRNA methyltransferase family protein, expressed
LOC_Os02g49370Os.8891.1.S1_at10/112+30158404..30159572leafy cotyledon1, putative, expressed
LOC_Os02g49380NANA2+30163597..30166399hypothetical protein
LOC_Os02g49390NANA2+30170408..30176634retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0031225cellular_componentanchored to membrane
GO:0005489molecular_functionelectron transporter activity
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7446.1.S1_s_at--1071--1432Chr07:28990879..28991266 (25 bp)
AGAAGAAGAACGTGTCATGTCATCT
NONE
Os.7446.1.S1_s_at--529--6311Chr02:30151839..30151863 (25 bp)
GATGACAGGATCGAGTCCATTTTTG
LOC_Os02g49350
Os.7446.1.S1_s_at--1124--5651Chr02:30151836..30151860 (25 bp)
GACAGGATCGAGTCCATTTTTGTTA
LOC_Os02g49350
Os.7446.1.S1_s_at--1136--972Chr06:8169863..8169917 (24 bp)
AGGATCGAGTCCATTTTTGTTAATT
NONE
Os.7446.1.S1_s_at--497--6391Chr02:30151831..30151855 (25 bp)
GATCGAGTCCATTTTTGTTAATTAG
LOC_Os02g49350
Os.7446.1.S1_s_at--495--9731Chr02:30151813..30151837 (25 bp)
TAATTAGGGTGTTCCAATGTTTTGT
LOC_Os02g49350
Os.7446.1.S1_s_at--80--10091Chr02:30151809..30151833 (25 bp)
TAGGGTGTTCCAATGTTTTGTCTAG
LOC_Os02g49350
Os.7446.1.S1_s_at--176--7731Chr02:30151806..30151830 (25 bp)
GGTGTTCCAATGTTTTGTCTAGGGT
LOC_Os02g49350
Os.7446.1.S1_s_at--294--6691Chr02:30151803..30151827 (25 bp)
GTTCCAATGTTTTGTCTAGGGTACT
LOC_Os02g49350
Os.7446.1.S1_s_at--497--9191Chr02:30151801..30151825 (25 bp)
TCCAATGTTTTGTCTAGGGTACTTA
LOC_Os02g49350
Os.7446.1.S1_s_at--1116--3191Chr02:30151799..30151823 (25 bp)
CAATGTTTTGTCTAGGGTACTTAAT
LOC_Os02g49350
Target Sequence 
AGAAGAAGAACGTGTCATGTCATCTCGCGGNAGATGACAGGATCGAGTCCATTTTTGTTAATTAGGGTGTTCCAATGTTT
TGTCTAGGGTACTTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7446.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis