Browse Element(s) Details


Os.7502.1.S1_at

Description gb:AK102719.1
DB_XREF= gi:32987928
TID=Os.7502.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7502 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0684B02.17 (P0684B02.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033105F22, full insert sequence.
FL= gb:AK102719.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5093011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50860Os.27607.2.S1_x_at11/111+29543795..29548654CBS domain containing protein, expressed
LOC_Os01g50860Os.27607.1.A1_at11/111+29543795..29548654CBS domain containing protein, expressed
LOC_Os01g50870NANA1+29550035..29550346hypothetical protein
LOC_Os01g50880OsAffx.11551.1.S1_at11/111+29553402..29553811hypothetical protein
LOC_Os01g50890NANA1+29557804..29558064hypothetical protein
LOC_Os01g50900Os.47750.1.A1_at11/111+29558747..29559638Germin-like protein subfamily T member 2 precursor, putative, expressed
LOC_Os01g50910Os.10933.1.S1_at11/111+29559895..29561103Late embryogenesis abundant protein, expressed
LOC_Os01g50930Os.7502.2.S1_at11/111+29566915..29573689expressed protein
LOC_Os01g50930Os.7502.1.S1_at11/111+29566915..29573689expressed protein
LOC_Os01g50940Os.46956.1.S1_at10/111+29598028..29600087Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7502.1.S1_at--595--1311Chr01:29567428..29567452 (25 bp)
AGATGGGACCTCTTTTCAGAACGGA
LOC_Os01g50930
Os.7502.1.S1_at--397--5011Chr01:29567395..29567419 (25 bp)
GCAGGTAGTTTTGCTGCGTACACTA
LOC_Os01g50930
Os.7502.1.S1_at--920--2051Chr01:29567336..29567360 (25 bp)
ACTTCCATGATCAAATGCCGCCTAT
LOC_Os01g50930
Os.7502.1.S1_at--1154--9771Chr01:29567262..29567286 (25 bp)
TAAGGGCAGTGGATCCTGTCATTTT
LOC_Os01g50930
Os.7502.1.S1_at--236--4891Chr01:29567221..29567245 (25 bp)
GCTTTGCTTTACATGAGTCCAGGAC
LOC_Os01g50930
Os.7502.1.S1_at--652--6051Chr01:29567179..29567203 (25 bp)
GAGTTCTGCCGTGAAAACCATGTCA
LOC_Os01g50930
Os.7502.1.S1_at--948--10771Chr01:29567081..29567105 (25 bp)
TTGTCTTCCTACTGTACCGTTGTAA
LOC_Os01g50930
Os.7502.1.S1_at--750--5191Chr01:29567048..29567072 (25 bp)
GATTTACCTTGGACTTGGCTACCTA
LOC_Os01g50930
Os.7502.1.S1_at--879--1171Chr01:29567016..29567040 (25 bp)
AGTACCCAGGGTGAGTCTAAGCAAC
LOC_Os01g50930
Os.7502.1.S1_at--689--10711Chr01:29566985..29567009 (25 bp)
TTGCTTCTCTTTTGGGTGGCAACCA
LOC_Os01g50930
Os.7502.1.S1_at--318--7531Chr01:29566970..29566994 (25 bp)
GTGGCAACCATATCCTGAATCCTAA
LOC_Os01g50930
Target Sequence 
AGATGGGACCTCTTTTCAGAACGGAGCAGTCCTGCAGGTAGTTTTGCTGCGTACACTATACGGTTTGGGAGGATTTGGGG
ATACCTCGCATCACTTCCATGATCAAATGCCGCCTATCTCCAGATCTCTGATATTTTGCAAGAAGTTCACCAGGCTTAAT
GTACAGTAAGGGCAGTGGATCCTGTCATTTTGTTTGGACGGTCTTCTGCTTTGCTTTACATGAGTCCAGGACTATAAAAA
GTGAACAGTGAGTTCTGCCGTGAAAACCATGTCAATGGGGGTAGACAACCATTTTCTCATGCATCAAGCTTTGATTAATC
AAAAGATCCATCGGGTCCATGCTACTGTTGTCTTCCTACTGTACCGTTGTAATCTCAACTGATTTACCTTGGACTTGGCT
ACCTAGTACAGTAGTACCCAGGGTGAGTCTAAGCAACTATATTTTGCTTCTCTTTTGGGTGGCAACCATATCCTGAATCC
TAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7502.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis