Browse Element(s) Details


Os.7514.1.S1_at

Description gb:AK058987.1
DB_XREF= gi:32969005
TID=Os.7514.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7514 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs C73405(E4048),AU101260(E4048)~unknown protein (OJ1123_C12.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-020-E10, full insert sequence.
FL= gb:AK058987.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0200011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01950Os.10404.1.S1_at11/117+581828..585086expressed protein
LOC_Os07g01960OsAffx.16037.2.S1_at11/117+585901..586437hypothetical protein
LOC_Os07g01960OsAffx.16037.2.S1_s_at11/117+585901..586437hypothetical protein
LOC_Os07g01970OsAffx.22516.1.S1_at11/117+586973..587809retrotransposon protein, putative, unclassified
LOC_Os07g01990OsAffx.16038.1.S1_s_at11/117+602885..605785expressed protein
LOC_Os07g01990Os.18016.1.S1_at11/117+602885..605785expressed protein
LOC_Os07g02000Os.7514.1.S1_at11/117+605984..606947expressed protein
LOC_Os07g02030OsAffx.10277.1.S1_at11/117+610802..617711Thiamine pyrophosphate enzyme, N-terminal TPP binding domain containing protein, expressed
LOC_Os07g02030OsAffx.10277.1.S1_x_at11/117+610802..617711Thiamine pyrophosphate enzyme, N-terminal TPP binding domain containing protein, expressed
LOC_Os07g02030Os.9443.1.S1_at11/117+610802..617711Thiamine pyrophosphate enzyme, N-terminal TPP binding domain containing protein, expressed
LOC_Os07g02040OsAffx.28227.1.S1_x_at10/117+621772..622759hypothetical protein
LOC_Os07g02040Os.50959.1.S1_at1/117+621772..622759hypothetical protein
LOC_Os07g02050NANA7+626147..626607retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g02060Os.38985.1.S1_at11/117+628861..632615WRKY DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7514.1.S1_at--905--1051Chr07:606358..606382 (25 bp)
AGGTGGTCAGTCGTCTTGATGTGAT
LOC_Os07g02000
Os.7514.1.S1_at--611--10291Chr07:606396..606420 (25 bp)
TTTCCCTACATGACACGCGAGATGG
LOC_Os07g02000
Os.7514.1.S1_at--729--2091Chr07:606472..606496 (25 bp)
ACATCAGGCAGCTTGCTAATCCTTA
LOC_Os07g02000
Os.7514.1.S1_at--1032--9751Chr07:606488..606643 (25 bp)
TAATCCTTACCATGGGCCGGCTGAT
LOC_Os07g02000
Os.7514.1.S1_at--729--2231Chr07:606675..606699 (25 bp)
ACAATCTTGCTCTGCTTTTTACTCT
LOC_Os07g02000
Os.7514.1.S1_at--499--10371Chr07:606691..606715 (25 bp)
TTTTACTCTCTCCACGTTATTTGGG
LOC_Os07g02000
Os.7514.1.S1_at--415--8311Chr07:606715..606739 (25 bp)
GGCGTTTAGTACTCTAGCCAAGCTA
LOC_Os07g02000
Os.7514.1.S1_at--142--2731Chr07:606740..606764 (25 bp)
AAGCAGACACGGACAGTGGACCAAT
LOC_Os07g02000
Os.7514.1.S1_at--965--7431Chr07:606765..606789 (25 bp)
GTGTCCAGACCCAAACTAGTTAAAG
LOC_Os07g02000
Os.7514.1.S1_at--688--6911Chr07:606804..606828 (25 bp)
GTATGGATTCCAGTCCCAAACTTGT
LOC_Os07g02000
Os.7514.1.S1_at--1053--2611Chr07:606835..606859 (25 bp)
AACCGCTGACGTTGTATTGGATATC
LOC_Os07g02000
Target Sequence 
AGGTGGTCAGTCGTCTTGATGTGATGGAGGATATAAGCTTTCCCTACATGACACGCGAGATGGCCGCCGTACTGCGGCGG
AGCNGTNTTGCGGCTGTCGAACACAACANTTTTAACATCAGGCAGCTTGCTAATCCTTACCATGGGCCGGCTGATGGAGA
TATCCTGTATGACAGGGCATGGATTAACAATCTTGCTCTGCTTTTTACTCTCTCCACGTTATTTGGGGCGTTTAGTACTC
TAGCCAAGCTAAAGCAGACACGGACAGTGGACCAATGTGTCCAGACCCAAACTAGTTAAAGCAACCNCTGAGGTTGTATG
GATTCCAGTCCCAAACTTGTTAAATCAACCGCTGACGTTGTATTGGATATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7514.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis