Browse Element(s) Details


Os.7532.1.S1_at

Description gb:AK058816.1
DB_XREF= gi:32968834
TID=Os.7532.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.7532 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-003-F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-003-F06, full insert sequence.
FL= gb:AK058816.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2038011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g20350Os.2436.1.S1_at1/112+11988332..11992855transposon protein, putative, unclassified
LOC_Os02g20360Os.7989.1.S1_at9/112+11997094..12002615tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g20370OsAffx.24345.1.S1_at11/112+12004894..12005217hypothetical protein
LOC_Os02g20370OsAffx.24345.1.S1_x_at11/112+12004894..12005217hypothetical protein
LOC_Os02g20370OsAffx.13996.1.S1_x_at1/112+12004894..12005217hypothetical protein
LOC_Os02g20380Os.7532.1.S1_at11/112+12009030..12015471expressed protein
LOC_Os02g20394OsAffx.12131.1.S1_at11/112+12019005..12023440DnaJ domain containing protein, expressed
LOC_Os02g20394Os.53015.1.S1_at10/112+12019005..12023440DnaJ domain containing protein, expressed
LOC_Os02g20410Os.25204.1.S1_at11/112+12023811..12034637Guanylate-binding protein, N-terminal domain containing protein, expressed
LOC_Os02g20410Os.5767.1.S1_at1/112+12023811..12034637Guanylate-binding protein, N-terminal domain containing protein, expressed
LOC_Os02g20420OsAffx.12134.1.S1_at3/112+12039379..12052089retrotransposon protein, putative, LINE subclass
LOC_Os02g20420OsAffx.12133.1.S1_at1/112+12039379..12052089retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7532.1.S1_at--693--31Chr02:12009361..12009385 (25 bp)
ATTGGTGATGTTGTCGACTCGGTGA
LOC_Os02g20380
Os.7532.1.S1_at--987--7351Chr02:12009340..12009364 (25 bp)
GTGAACTATCATTAACCTTGGCGGA
LOC_Os02g20380
Os.7532.1.S1_at--445--10851Chr02:12009323..12009347 (25 bp)
TTGGCGGAGTATAGTGCACCCCTTG
LOC_Os02g20380
Os.7532.1.S1_at--895--1111Chr02:12009311..12009335 (25 bp)
AGTGCACCCCTTGATATTGTAAGTT
LOC_Os02g20380
Os.7532.1.S1_at--1078--751Chr02:12009225..12009249 (25 bp)
ATGTCACAATAGGTTCTTGGCGTAA
LOC_Os02g20380
Os.7532.1.S1_at--864--6791Chr02:12009188..12009212 (25 bp)
GTTATCAGTTATGTGGTCTGCTCTG
LOC_Os02g20380
Os.7532.1.S1_at--37--9491Chr02:12009172..12009196 (25 bp)
TCTGCTCTGAATGCGACTGTTTGAT
LOC_Os02g20380
Os.7532.1.S1_at--623--8771Chr02:12009155..12009179 (25 bp)
TGTTTGATGTCACTACGCCGCCATG
LOC_Os02g20380
Os.7532.1.S1_at--220--7851Chr02:12009131..12009155 (25 bp)
GGTACTGTACATATGTCGCCATTCG
LOC_Os02g20380
Os.7532.1.S1_at--212--271Chr02:12009121..12009145 (25 bp)
ATATGTCGCCATTCGGTAACACGTG
LOC_Os02g20380
Os.7532.1.S1_at--1061--7031Chr02:12009106..12009130 (25 bp)
GTAACACGTGACCTCAAAGACTTGA
LOC_Os02g20380
Target Sequence 
ATTGGTGATGTTGTCGACTCGGTGAACTATCATTAACCTTGGCGGAGTATAGTGCACCCCTTGATATTGTAAGTTGCAAC
ACTACTTATTTAGCAGCTGATCATGCATTATCTATGTTTTTTTGTGATATAGATATATGTCACAATAGGTTCTTGGCGTA
AGTTCATCATGTAGTTATCAGTTATGTGGTCTGCTCTGAATGCGACTGTTTGATGTCACTACGCCGCCATGGTACTGTAC
ATATGTCGCCATTCGGTAACACGTGACCTCAAAGACTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7532.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis