Browse Element(s) Details


Os.7543.1.S1_at

Description gb:AK068221.1
DB_XREF= gi:32978239
TID=Os.7543.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7543 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cinnamyl alcohol dehydrogenase (OSJNBb0005F01.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013135D23, full insert sequence.
FL= gb:AK068221.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1181011/11mannitol dehydrogenase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g11780Os.49923.1.S1_at1/1110+6279355..6282068hypothetical protein
LOC_Os10g11794OsAffx.31892.2.S1_x_at11/1110+6284476..6296025retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11794OsAffx.31892.2.S1_at11/1110+6284476..6296025retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11794OsAffx.7216.1.S1_at2/1110+6284476..6296025retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11794OsAffx.24431.1.S1_at2/1110+6284476..6296025retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11794OsAffx.16438.1.S1_at1/1110+6284476..6296025retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11794OsAffx.31892.5.S1_x_at1/1110+6284476..6296025retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11810Os.7543.1.S1_at11/1110+6305945..6309391mannitol dehydrogenase, putative, expressed
LOC_Os10g11820OsAffx.30394.1.S1_at11/1110+6317266..6320164expressed protein
LOC_Os10g11830NANA10+6322727..6323140expressed protein
LOC_Os10g11844NANA10+6330568..6332687hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009617biological_processresponse to bacteria
GO:0009626biological_processhypersensitive response
GO:0009809biological_processlignin biosynthesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7543.1.S1_at--251--7071Chr10:6308682..6308706 (25 bp)
GTAATGGCACTACTTAGCTTCCCAA
LOC_Os10g11810
Os.7543.1.S1_at--467--1111Chr10:6308706..6308730 (25 bp)
AGTGAAATCAAAGTGCATCCTGCAA
LOC_Os10g11810
Os.7543.1.S1_at--999--5111Chr10:6308727..6308865 (25 bp)
GCAAACCTTAATCTCGGTGGGCGGA
LOC_Os10g11810
Os.7543.1.S1_at--559--6031Chr10:6308907..6308931 (25 bp)
GAGATGATAAACTTCTGTGCGGCAA
LOC_Os10g11810
Os.7543.1.S1_at--361--8691Chr10:6308922..6308946 (25 bp)
TGTGCGGCAAACAAAATCTACCCAG
LOC_Os10g11810
Os.7543.1.S1_at--754--6491Chr10:6308963..6308987 (25 bp)
GATAGATTACATCAACGAGGCTCTT
LOC_Os10g11810
Os.7543.1.S1_at--396--5831Chr10:6309000..6309024 (25 bp)
GACCGGGATGTCAGATTTCGCTTTG
LOC_Os10g11810
Os.7543.1.S1_at--649--6531Chr10:6309013..6309037 (25 bp)
GATTTCGCTTTGTAATCGACATTGA
LOC_Os10g11810
Os.7543.1.S1_at--1101--8891Chr10:6309035..6309059 (25 bp)
TGAGAACTCGTTCAAGTAGTATCTT
LOC_Os10g11810
Os.7543.1.S1_at--15--6911Chr10:6309053..6309077 (25 bp)
GTATCTTGATATCTTCAGTACACCA
LOC_Os10g11810
Os.7543.1.S1_at--188--6311Chr10:6309129..6309153 (25 bp)
GATGAGACCATGAGACAGTTCCAGA
LOC_Os10g11810
Target Sequence 
GTAATGGCACTACTTAGCTTCCCAAGTGAAATCAAAGTGCATCCTGCAAACCTTAATCTCGGTGGGCGGAGTTTATCTGG
TAGTGTAACTGGAGGTACGAAGGACATCCAGGAGATGATAAACTTCTGTGCGGCAAACAAAATCTACCCAGATATCGAGA
TGATCAAGATAGATTACATCAACGAGGCTCTTCAGAGGCTTGTTGACCGGGATGTCAGATTTCGCTTTGTAATCGACATT
GAGAACTCGTTCAAGTAGTATCTTGATATCTTCAGTACACCATTAATGATAGAAGTGTATGCAATAATAATAAGTTTAAA
TGTCCTACAAGATGATGAGACCATGAGACAGTTCCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7543.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis