Browse Element(s) Details


Os.7579.1.S1_at

Description gb:AK106189.1
DB_XREF= gi:32991398
TID=Os.7579.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7579 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-208-D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-208-D12, full insert sequence.
FL= gb:AK106189.1 gb:AK069875.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3056011/11oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os01g406501/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g30540NANA11+17256570..17259402retrotransposon protein, putative, unclassified
LOC_Os11g30546NANA11+17271477..17271995transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g30552Os.14491.2.S1_x_at5/1111+17273413..17278368transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g30552Os.47463.1.S1_x_at5/1111+17273413..17278368transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g30560Os.7579.1.S1_at11/1111+17282414..17289933oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os11g30570OsAffx.7258.1.S1_at10/1111+17290352..17292471hypothetical protein
LOC_Os11g30590Os.40626.1.S1_at5/1111+17305183..17308975hAT family dimerisation domain containing protein
LOC_Os11g30590Os.40626.2.S1_x_at5/1111+17305183..17308975hAT family dimerisation domain containing protein
LOC_Os11g30600OsAffx.7259.1.S1_at11/1111+17314337..17317634hypothetical protein
LOC_Os11g30600OsAffx.31230.1.S1_at11/1111+17314337..17317634hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7579.1.S1_at--251--8471Chr11:17289397..17289421 (25 bp)
TGGCGACGCCCTCAGCAAGAAGATC
LOC_Os11g30560
Os.7579.1.S1_at--555--1831Chr11:17289402..17289426 (25 bp)
ACGCCCTCAGCAAGAAGATCCTCGA
LOC_Os11g30560
Os.7579.1.S1_at--528--2771Chr11:17289458..17289482 (25 bp)
AAGACCATCCGCAGCCATGCCATCG
LOC_Os11g30560
Os.7579.1.S1_at--136--591Chr11:17289474..17289498 (25 bp)
ATGCCATCGCCGCTAGCTAATATAA
LOC_Os11g30560
Os.7579.1.S1_at--630--4431Chr11:17289476..17289500 (25 bp)
GCCATCGCCGCTAGCTAATATAATG
LOC_Os11g30560
Os.7579.1.S1_at--424--4331Chr11:17289477..17289501 (25 bp)
CCATCGCCGCTAGCTAATATAATGC
LOC_Os11g30560
Os.7579.1.S1_at--787--10171Chr11:17289494..17289518 (25 bp)
TATAATGCTCATATATCACACTGAT
LOC_Os11g30560
Os.7579.1.S1_at--545--632Chr11:17289498..17289522 (25 bp)
ATGCTCATATATCACACTGATTGAT
LOC_Os11g30560
Os.7579.1.S1_at--83--4951Chr11:17289625..17289649 (25 bp)
GCATAAGAAATACTTCAGTTAAAGA
LOC_Os11g30560
Os.7579.1.S1_at--713--232Chr11:17289681..17289705 (25 bp)
ATATATAGTGTACTTGTTCTTTTAC
LOC_Os11g30560
Os.7579.1.S1_at--92--3211Chr11:17289773..17289797 (25 bp)
CAATGTAAGCAATGTGATGTGAATC
LOC_Os11g30560
Target Sequence 
TGGCGACGCCCTCAGCAAGAAGATCCTCGAGGCCGTCGGCGGCAAGAAGTTCCTNTACCCCAAGACCATCCGCAGCCATG
CCATCGCCGCTAGCTAATATAATGCTCATATATCACACTGATTGATCGATCCATCCAAGCTATAGTTGCAACCTACCTAT
ATATATATAAACTTTTTTTATACATGATGATATCATGATCTTTTGATAATGATGATTGGTTTGTTTTAGCATAAGAAATA
CTTCAGTTAAAGAGGATTGGGAGATGAAATGGGTGTGTGGGTGGATATATAGTGTACTTGTTCTTTTACTACCCCTTTTT
TTTTTTGCATTTGGGCTTTTTTTTAGTTTCTTTTTTTCTTTTTTCTCTTTAAAAAATCAATGTAAGCAATGTGATGTGAA
TC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7579.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis