Browse Element(s) Details


Os.7629.1.S1_at

Description gb:AK109529.1
DB_XREF= gi:32994738
TID=Os.7629.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.7629 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-116-D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-116-D09, full insert sequence.
FL= gb:AK109529.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g301603/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g30140OsAffx.30095.1.S1_at11/119+18330306..18332053expressed protein
LOC_Os09g30140Os.55282.1.S1_x_at11/119+18330306..18332053expressed protein
LOC_Os09g30140Os.55282.1.S1_at11/119+18330306..18332053expressed protein
LOC_Os09g30150Os.9184.1.S1_at11/119+18338633..18342613Protein kinase G11A, putative, expressed
LOC_Os09g30150Os.16381.1.S1_a_at1/119+18338633..18342613Protein kinase G11A, putative, expressed
LOC_Os09g30160Os.7629.1.S1_at3/119+18350993..18351638Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g30160OsAffx.6448.1.S1_at1/119+18350993..18351638Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g30170OsAffx.6449.1.S1_at11/119+18359710..18362282F-box protein interaction domain containing protein, expressed
LOC_Os09g30180Os.23911.1.S1_at10/119+18363591..18367258F-box protein interaction domain containing protein, expressed
LOC_Os09g30190OsAffx.30096.1.S1_x_at11/119+18374695..18378226protein kinase family protein, putative, expressed
LOC_Os09g30190Os.56726.1.S1_x_at10/119+18374695..18378226protein kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7629.1.S1_at--901--3331Chr09:18351230..18351254 (25 bp)
CACGTTCAGGGCGAGGTTCCGACCG
LOC_Os09g30160
Os.7629.1.S1_at--86--4571Chr09:18351087..18351111 (25 bp)
GCGCCTGCCTCGAGACATGGCTTGA
LOC_Os09g30160
Os.7629.1.S1_at--1070--5971Chr09:18351076..18351100 (25 bp)
GAGACATGGCTTGACTACGACCACG
LOC_Os09g30160
Os.7629.1.S1_at--221--9371Chr09:18350954..18350978 (25 bp)
TCGACTCGATTCGATTCTCCGACGA
NONE
Os.7629.1.S1_at--824--1331Chr09:18350861..18350885 (25 bp)
AGAGAGCTCTTTGCCTTTTTTGCAC
NONE
Os.7629.1.S1_at--1109--7851Chr09:18350796..18350820 (25 bp)
GGTTTGTGCCTGTACCGTGTAAATA
NONE
Os.7629.1.S1_at--963--6971Chr09:18350785..18350809 (25 bp)
GTACCGTGTAAATACCTCGCAGCAA
NONE
Os.7629.1.S1_at--863--9971Chr09:18350773..18350797 (25 bp)
TACCTCGCAGCAAGAGAGTGCTCCT
NONE
Os.7629.1.S1_at--912--1331Chr09:18350761..18350785 (25 bp)
AGAGAGTGCTCCTACGGGTGTAGCA
NONE
Os.7629.1.S1_at--875--7711Chr09:18350746..18350770 (25 bp)
GGGTGTAGCACTTTTTGTGAGCTTT
NONE
Os.7629.1.S1_at--63--4871Chr09:18350726..18350750 (25 bp)
GCTTTGTGTATAAAACCTTCTCGGA
NONE
Target Sequence 
CACGTTCAGGGCGAGGTTCCGACCGGCGCGGTTCGGCCACCGGCGCTGCGGCGGCGGCGCGACGGCGGACTGCCGCGTCT
GCCTGGTGCGGTTCGAGGCGGAGGCGGTGGTGAACCGCCTCCCCTGCGGTCACATCTTCCACCGCGCCTGCCTCGAGACA
TGGCTTGACTACGACCACGCCACCTGCCCGCTCTGCCGCTCCCGCCTCCTCGCCGCCTCCTCCTCGCCGCCGGCCGCCGC
CGCCGCNTTGGCCCGGACTTAGNGAGTGGATTCGATTCGACTCGATTCGATTCTCCGACGAGCCGCCCCGCGCCGGCTAC
GCGCCACCGTCTCCGGGTGGCCTCCCCGTGTGGGCGTAGGAAACTAGAGAGAGAGCTCTTTGCCTTTTTTGCACTTTCAC
CCCTCACTTTGTCCCTTTTTTTTCCGTTTCGGGCGGTTTGTGCCTGTACCGTGTAAATACCTCGCAGCAAGAGAGTGCTC
CTACGGGTGTAGCACTTTTTGTGAGCTTTGTGTATAAAACCTTCTCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7629.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis