Browse Element(s) Details


Os.7633.1.S1_at

Description gb:AK108786.1
DB_XREF= gi:32993995
TID=Os.7633.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7633 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-151-B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-151-B01, full insert sequence.
FL= gb:AK108786.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3081011/11Auxin responsive protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g30790Os.52903.1.S1_at11/112+18337705..18341212expressed protein
LOC_Os02g30800OsAffx.12295.1.S1_at10/112+18343019..18365090DNA polymerase family B, exonuclease domain containing protein, expressed
LOC_Os02g30810Os.7633.1.S1_at11/112+18365577..18367000Auxin responsive protein, expressed
LOC_Os02g30820OsAffx.28031.1.S1_x_at2/112+18371649..18372751hypothetical protein
LOC_Os02g30830OsAffx.12297.1.S1_at11/112+18374877..18375260hypothetical protein
LOC_Os02g30840Os.53662.1.S1_at11/112+18379408..18384495RNA pseudouridylate synthase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7633.1.S1_at--1085--7391Chr02:18365952..18365976 (25 bp)
GTGATCGATGTCTCGGCATCTCTCG
LOC_Os02g30810
Os.7633.1.S1_at--778--7271Chr02:18365898..18365922 (25 bp)
GTGCCCGTCCTTAGTTAATCAATTT
LOC_Os02g30810
Os.7633.1.S1_at--934--3111Chr02:18365878..18365902 (25 bp)
AATTTGCTGTCTGCTTGTAAGTACT
LOC_Os02g30810
Os.7633.1.S1_at--493--10171Chr02:18365854..18365878 (25 bp)
TATAGTAGGCACGTGTTGGGCGCAT
LOC_Os02g30810
Os.7633.1.S1_at--986--1331Chr02:18365825..18365849 (25 bp)
AGAGAGGTTTGTTCACCTGCTTGCT
LOC_Os02g30810
Os.7633.1.S1_at--58--4891Chr02:18365799..18365823 (25 bp)
GCTTTGCTATGCTATGACTGTGATA
LOC_Os02g30810
Os.7633.1.S1_at--508--1211Chr02:18365759..18365783 (25 bp)
AGTTCAACTGTTCATGTCAACGTTT
LOC_Os02g30810
Os.7633.1.S1_at--885--2551Chr02:18365741..18365765 (25 bp)
AACGTTTGTTTCCATGTCGCGTTCG
LOC_Os02g30810
Os.7633.1.S1_at--928--7231Chr02:18365726..18365750 (25 bp)
GTCGCGTTCGATGTATCTCTGTAAT
LOC_Os02g30810
Os.7633.1.S1_at--543--6111Chr02:18365684..18365708 (25 bp)
GAGTGATCTCATGCGTGTTCAACCA
LOC_Os02g30810
Os.7633.1.S1_at--236--7411Chr02:18365670..18365694 (25 bp)
GTGTTCAACCAACCCCTAAGTCGAT
LOC_Os02g30810
Target Sequence 
GTGATCGATGTCTCGGCATCTCTCGCGACGCCGGCCATCGCCGGCGATCTCGTCGTGCCCGTCCTTAGTTAATCAATTTG
CTGTCTGCTTGTAAGTACTATAGTAGGCACGTGTTGGGCGCATGCAGAGAGAGGTTTGTTCACCTGCTTGCTTGCTTTGC
TATGCTATGACTGTGATAGGGTAGGGGTGTTCAAGTTCAACTGTTCATGTCAACGTTTGTTTCCATGTCGCGTTCGATGT
ATCTCTGTAATCGTAGTTTTGTATGTGTGAGTGATCTCATGCGTGTTCAACCAACCCCTAAGTCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7633.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis