Browse Element(s) Details


Os.7658.1.S1_x_at

Description gb:AK071490.1
DB_XREF= gi:32981513
TID=Os.7658.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7658 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033089D19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023096O12, full insert sequence.
FL= gb:AK071490.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0601011/11integral membrane family protein, putative, expressed
LOC_Os02g310741/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g05970OsAffx.2516.1.S1_s_at11/112+2971989..2975380Leucine Rich Repeat family protein, expressed
LOC_Os02g05970OsAffx.2516.1.S1_at10/112+2971989..2975380Leucine Rich Repeat family protein, expressed
LOC_Os02g05980Os.49840.1.S1_at11/112+2978853..2982354Leucine Rich Repeat family protein, expressed
LOC_Os02g05990Os.14919.1.S1_at3/112+2988829..2991655hypothetical protein
LOC_Os02g06000NANA2+2992171..2994782transposon protein, putative, Mutator sub-class
LOC_Os02g06010Os.7658.1.S1_x_at11/112+2995584..2999836integral membrane family protein, putative, expressed
LOC_Os02g06010Os.8125.1.S1_x_at1/112+2995584..2999836integral membrane family protein, putative, expressed
LOC_Os02g06030Os.52494.2.S1_at1/112+3005600..3007976Leucine Rich Repeat family protein, expressed
LOC_Os02g06040NANA2+3010774..3013997retrotransposon protein, putative, unclassified
LOC_Os02g06050NANA2+3014624..3020779transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0015784biological_processGDP-mannose transport
GO:0005794cellular_componentGolgi apparatus
GO:0016020cellular_componentmembrane
GO:0005338molecular_functionnucleotide-sugar transporter activity
GO:0005458molecular_functionGDP-mannose transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7658.1.S1_x_at--660--6072Chr02:3053703..3053727 (25 bp)
GAGTTATCTGCAACCTTGTCTGACT
NONE
Os.7658.1.S1_x_at--338--7171Chr02:2999388..2999412 (25 bp)
GTCTGACTTTAGCATTGGCATCTCC
LOC_Os02g06010
Os.7658.1.S1_x_at--333--4071Chr02:2999421..2999445 (25 bp)
CGCTGGTATTTCTCCTGTAAGGCTA
LOC_Os02g06010
Os.7658.1.S1_x_at--793--8831Chr02:2999486..2999510 (25 bp)
TGATCCAGGTCGGTATTGGTCCACT
LOC_Os02g06010
Os.7658.1.S1_x_at--325--4351Chr02:2999506..2999530 (25 bp)
CCACTGAGTTGATTGCTGTATAAAG
LOC_Os02g06010
Os.7658.1.S1_x_at--747--712Chr02:2999529..2999553 (25 bp)
AGTTAAAACCTGCAAATTTCTGAGT
LOC_Os02g06010
Os.7658.1.S1_x_at--440--9971Chr02:2999576..2999600 (25 bp)
TACCATACAGTGCACAACGCTCTAT
LOC_Os02g06010
Os.7658.1.S1_x_at--73--1851Chr02:2999592..2999616 (25 bp)
ACGCTCTATGGCAAGACCCTGAATA
LOC_Os02g06010
Os.7658.1.S1_x_at--62--572Chr02:3006431..3006455 (25 bp)
ATCCTGTGGCATAGCTTCATTCTTG
NONE
Os.7658.1.S1_x_at--956--9592Chr02:3006447..3006471 (25 bp)
TCATTCTTGAAGTTGCTCCCCATAA
NONE
Os.7658.1.S1_x_at--214--5653Chr02:2999685..2999709 (25 bp)
GACAGTGAGGTTCCTTAAGCTCTTG
LOC_Os02g06010
Target Sequence 
GAGTTATCTGCAACCTTGTCTGACTTTAGCATTGGCATCTCCATTAGTGCCGCTGGTATTTCTCCTGTAAGGCTATTATT
GGATACATCCACATACTTAAGGAAGTTAAGGCTATTGATCCAGGTCGGTATTGGTCCACTGAGTTGATTGCTGTATAAAG
TTAAAACCTGCAAATTTCTGAGTTTTGATAACCAATTAGGTATCTTACCATACAGTGCACAACGCTCTATGGCAAGACCC
TGAATATTCTCAAAACCATCAATTGCTTCATCCTGTGGCATAGCTTCATTCTTGAAGTTGCTCCCCATAAACAAGACAGT
GAGGTTCCTTAAGCTCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7658.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis