Browse Element(s) Details


Os.52494.2.S1_at

Description gb:AK107566.1
DB_XREF= gi:32992775
TID=Os.52494.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52494 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-130-C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-130-C08, full insert sequence.
FL= gb:AK107566.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0609011/11Leucine Rich Repeat family protein, expressed
LOC_Os02g060301/11Leucine Rich Repeat family protein, expressed
LOC_Os02g061801/11Leucine Rich Repeat family protein, expressed
LOC_Os02g061401/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g06040NANA2+3010774..3013997retrotransposon protein, putative, unclassified
LOC_Os02g06050NANA2+3014624..3020779transposon protein, putative, unclassified
LOC_Os02g06060OsAffx.2517.1.S1_at11/112+3027549..3027803hypothetical protein
LOC_Os02g06070OsAffx.2518.1.S1_at11/112+3028946..3031111Leucine Rich Repeat family protein
LOC_Os02g06080OsAffx.24120.1.S1_at8/112+3034037..3036707hypothetical protein
LOC_Os02g06080Os.55688.1.S1_at1/112+3034037..3036707hypothetical protein
LOC_Os02g06090Os.52494.2.S1_at11/112+3037620..3039867Leucine Rich Repeat family protein, expressed
LOC_Os02g06100OsAffx.24121.3.S1_at2/112+3040887..3041192hypothetical protein
LOC_Os02g06110Os.35344.18.S1_x_at11/112+3043920..3047434transposon protein, putative, Mutator sub-class
LOC_Os02g06110Os.35344.3.S1_x_at9/112+3043920..3047434transposon protein, putative, Mutator sub-class
LOC_Os02g06110OsAffx.22940.5.S1_x_at3/112+3043920..3047434transposon protein, putative, Mutator sub-class
LOC_Os02g06120OsAffx.24122.1.S1_at11/112+3048519..3055297Leucine Rich Repeat family protein
LOC_Os02g06120OsAffx.32248.1.A1_at1/112+3048519..3055297Leucine Rich Repeat family protein
LOC_Os02g06130OsAffx.24123.1.S1_at11/112+3059575..3064559Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007165biological_processsignal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52494.2.S1_at--656--5351Chr02:3039271..3039295 (25 bp)
GAAGATCACCCAGATGGCCCAAGAG
LOC_Os02g06090
Os.52494.2.S1_at--963--1151Chr02:3039294..3039318 (25 bp)
AGTCTCCCCGTTCACAATTTATGTG
LOC_Os02g06090
Os.52494.2.S1_at--280--10351Chr02:3039311..3039335 (25 bp)
TTTATGTGGGTGTATCTTTGTGTTT
LOC_Os02g06090
Os.52494.2.S1_at--1067--9031Chr02:3039345..3039369 (25 bp)
TGCAGCTAGTGCATTCCCCAAAATG
LOC_Os02g06090
Os.52494.2.S1_at--104--10491Chr02:3039391..3039415 (25 bp)
TTAAGTGGTCTGATCCCTGTGGAGA
LOC_Os02g06090
Os.52494.2.S1_at--295--4211Chr02:3039478..3039502 (25 bp)
CCCCAATCGATCAGTGACATCAAGA
LOC_Os02g06090
Os.52494.2.S1_at--438--1031Chr02:3039540..3039564 (25 bp)
AGGTGCAATCCCATCGGCACTGGTG
LOC_Os02g06090
Os.52494.2.S1_at--109--8254Chr02:3039555..3039579 (25 bp)
GGCACTGGTGAACCTTCACTTCCTT
LOC_Os02g06090
Os.52494.2.S1_at--1154--9031Chr02:3039682..3039706 (25 bp)
TGCAGCCCAATGCTTGTACAGCATT
LOC_Os02g06090
Os.52494.2.S1_at--255--10752Chr02:3039705..3039729 (25 bp)
TTGCAATTTGGCAGAAGCAGCTCCA
LOC_Os02g06090
Os.52494.2.S1_at--511--8451Chr02:3039843..3039867 (25 bp)
TGGCTAAAGCAGTTCCAATAGAGAC
LOC_Os02g06090
Target Sequence 
GAAGATCACCCAGATGGCCCAAGAGTCTCCCCGTTCACAATTTATGTGGGTGTATCTTTGTGTTTTCAGTACCGTGCAGC
TAGTGCATTCCCCAAAATGTTGAATCTAGGTAATAACAAATTAAGTGGTCTGATCCCTGTGGAGATTGGTCAGTTGAAAG
CACTGCTTTCACTCAACTTGAGCTTCAACAATTTACATGGGGAGATCCCCCAATCGATCAGTGACATCAAGAATCTGATG
GGGCTAGACCTGTCTTCCAACCATCTGACAGGTGCAATCCCATCGGCACTGGTGAACCTTCACTTCCTTTCTGAATTCAA
CGTTTCCTACAATGACCTTCAAGGGCCTGTACCAATTGGAGGCCAGTTCAGCACATTTCCAAGTTCTAGTTTTGCTGGTA
ACCCAAAGCTATGCAGCCCAATGCTTGTACAGCATTGCAATTTGGCAGAAGCAGCTCCAACCTCCCCTACCTCCACAAAG
CAGTATATTGACAAGGTTGTCTTTGCAATTGGATTTGGTGTGTTCTTTGGAATAGGTGTGCTATATGATCAGACAATCAT
ATCCAGATATTTTGGCTAAAGCAGTTCCAATAGAGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52494.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis