Browse Element(s) Details


OsAffx.2517.1.S1_at

Description tigr:9630.m00534
TID=OsAffx.2517.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0606011/11hypothetical protein
LOC_Os02g151691/11Glutelin type-B 1 precursor, putative, expressed
LOC_Os02g151781/11Glutelin type-B 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g06030Os.52494.2.S1_at1/112+3005600..3007976Leucine Rich Repeat family protein, expressed
LOC_Os02g06040NANA2+3010774..3013997retrotransposon protein, putative, unclassified
LOC_Os02g06050NANA2+3014624..3020779transposon protein, putative, unclassified
LOC_Os02g06060OsAffx.2517.1.S1_at11/112+3027549..3027803hypothetical protein
LOC_Os02g06070OsAffx.2518.1.S1_at11/112+3028946..3031111Leucine Rich Repeat family protein
LOC_Os02g06080OsAffx.24120.1.S1_at8/112+3034037..3036707hypothetical protein
LOC_Os02g06080Os.55688.1.S1_at1/112+3034037..3036707hypothetical protein
LOC_Os02g06090Os.52494.2.S1_at11/112+3037620..3039867Leucine Rich Repeat family protein, expressed
LOC_Os02g06100OsAffx.24121.3.S1_at2/112+3040887..3041192hypothetical protein
LOC_Os02g06110Os.35344.18.S1_x_at11/112+3043920..3047434transposon protein, putative, Mutator sub-class
LOC_Os02g06110Os.35344.3.S1_x_at9/112+3043920..3047434transposon protein, putative, Mutator sub-class
LOC_Os02g06110OsAffx.22940.5.S1_x_at3/112+3043920..3047434transposon protein, putative, Mutator sub-class
LOC_Os02g06120OsAffx.24122.1.S1_at11/112+3048519..3055297Leucine Rich Repeat family protein
LOC_Os02g06120OsAffx.32248.1.A1_at1/112+3048519..3055297Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009845biological_processseed germination
GO:0042735cellular_componentprotein body
GO:0045735molecular_functionnutrient reservoir activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2517.1.S1_at--289--7231Chr02:3027737..3027761 (25 bp)
GTCGCCTTGCCAAAGGTCACCGCCG
LOC_Os02g06060
OsAffx.2517.1.S1_at--232--411Chr02:3027710..3027734 (25 bp)
ATCATCCCTACTTCCAGTGGGGGAG
LOC_Os02g06060
OsAffx.2517.1.S1_at--363--1591Chr02:3027679..3027703 (25 bp)
AGCTCGTCGACGCTAGAAGCGACTT
LOC_Os02g06060
OsAffx.2517.1.S1_at--286--9371Chr02:3027673..3027697 (25 bp)
TCGACGCTAGAAGCGACTTGAGGAC
LOC_Os02g06060
OsAffx.2517.1.S1_at--115--6211Chr02:3027635..3027659 (25 bp)
GAGGCAGGCCGCAGTGGGAGCTTAC
LOC_Os02g06060
OsAffx.2517.1.S1_at--265--3471Chr02:3027624..3027648 (25 bp)
CAGTGGGAGCTTACGAGGCTGCTAC
LOC_Os02g06060
OsAffx.2517.1.S1_at--819--8631Chr02:3027621..3027645 (25 bp)
TGGGAGCTTACGAGGCTGCTACAGA
LOC_Os02g06060
OsAffx.2517.1.S1_at--809--1531Chr02:3027617..3027641 (25 bp)
AGCTTACGAGGCTGCTACAGAGCCA
LOC_Os02g06060
OsAffx.2517.1.S1_at--126--9951Chr02:3027613..3027637 (25 bp)
TACGAGGCTGCTACAGAGCCAGGGC
LOC_Os02g06060
OsAffx.2517.1.S1_at--950--9071Chr02:3027605..3027629 (25 bp)
TGCTACAGAGCCAGGGCCGGTCCTA
LOC_Os02g06060
OsAffx.2517.1.S1_at--416--58519Chr12:1581147..1581167 (21 bp)
GAGCCAGGGCCGGTCCTATGATTTT
NONE
Target Sequence 
GTCGCCTTGCCAAAGGTCACCGCCGCCATCATCCCTACTTCCAGTGGGGGAGCTCCTCAGCTCGTCGACGCTAGAAGCGA
CTTGAGGACGGGGGACCTCGACGAGGCAGGCCGCAGTGGGAGCTTACGAGGCTGCTACAGAGCCAGGGCCGGTCCTATGA
TTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2517.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis