Browse Element(s) Details


OsAffx.2518.1.S1_at

Description tigr:9630.m00535
TID=OsAffx.2518.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to disease resistance proteins
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0607011/11Leucine Rich Repeat family protein
LOC_Os02g061801/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g06030Os.52494.2.S1_at1/112+3005600..3007976Leucine Rich Repeat family protein, expressed
LOC_Os02g06040NANA2+3010774..3013997retrotransposon protein, putative, unclassified
LOC_Os02g06050NANA2+3014624..3020779transposon protein, putative, unclassified
LOC_Os02g06060OsAffx.2517.1.S1_at11/112+3027549..3027803hypothetical protein
LOC_Os02g06070OsAffx.2518.1.S1_at11/112+3028946..3031111Leucine Rich Repeat family protein
LOC_Os02g06080OsAffx.24120.1.S1_at8/112+3034037..3036707hypothetical protein
LOC_Os02g06080Os.55688.1.S1_at1/112+3034037..3036707hypothetical protein
LOC_Os02g06090Os.52494.2.S1_at11/112+3037620..3039867Leucine Rich Repeat family protein, expressed
LOC_Os02g06100OsAffx.24121.3.S1_at2/112+3040887..3041192hypothetical protein
LOC_Os02g06110Os.35344.18.S1_x_at11/112+3043920..3047434transposon protein, putative, Mutator sub-class
LOC_Os02g06110Os.35344.3.S1_x_at9/112+3043920..3047434transposon protein, putative, Mutator sub-class
LOC_Os02g06110OsAffx.22940.5.S1_x_at3/112+3043920..3047434transposon protein, putative, Mutator sub-class
LOC_Os02g06120OsAffx.24122.1.S1_at11/112+3048519..3055297Leucine Rich Repeat family protein
LOC_Os02g06120OsAffx.32248.1.A1_at1/112+3048519..3055297Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007165biological_processsignal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2518.1.S1_at--832--1271Chr02:3029495..3029519 (25 bp)
AGATCACCCTGACCTAATAGTCTCC
LOC_Os02g06070
OsAffx.2518.1.S1_at--699--271Chr02:3029479..3029503 (25 bp)
ATAGTCTCCCCTTTTACAGTTTATG
LOC_Os02g06070
OsAffx.2518.1.S1_at--169--10431Chr02:3029459..3029483 (25 bp)
TTATGTGGGCGCATGTTTGTGTTTT
LOC_Os02g06070
OsAffx.2518.1.S1_at--690--3991Chr02:3029428..3029452 (25 bp)
CGTGCGACTAGTGCATTCCCAAAAA
LOC_Os02g06070
OsAffx.2518.1.S1_at--149--7651Chr02:3029301..3029325 (25 bp)
GGGAGATCCCACAAGCGATCAGCAA
LOC_Os02g06070
OsAffx.2518.1.S1_at--559--4372Chr02:3029293..3029317 (25 bp)
CCACAAGCGATCAGCAACCTCAAGA
LOC_Os02g06070
OsAffx.2518.1.S1_at--656--1031Chr02:3029231..3029255 (25 bp)
AGGTCCAATCCCATCAGGGCTGGTG
LOC_Os02g06070
OsAffx.2518.1.S1_at--761--1071Chr02:3029216..3029240 (25 bp)
AGGGCTGGTGAACCTTCATTTCCTT
LOC_Os02g06070
OsAffx.2518.1.S1_at--1155--4531Chr02:3029085..3029109 (25 bp)
GCCCTATGCTTGAACACCATTGCAA
LOC_Os02g06070
OsAffx.2518.1.S1_at--794--9011Chr02:3029065..3029089 (25 bp)
TGCAATTCAGCGGTAGCAGCTCCAA
LOC_Os02g06070
OsAffx.2518.1.S1_at--468--5613Chr01:31914470..31914534 (24 bp)
GACAAGGTAGTGTTTGCAATTGCAT
NONE
Target Sequence 
AGATCACCCTGACCTAATAGTCTCCCCTTTTACAGTTTATGTGGGCGCATGTTTGTGTTTTCAGTACCGTGCGACTAGTG
CATTCCCAAAAATGTTGAATCTAGGTAACAACAAATTAAGTGGTGTGATCCCCATGGAGATTGGTCAGTTGAAAGAACTG
CTTTCACTCAACTTGAGCTTCAACAACTTAAACGGGGAGATCCCACAAGCGATCAGCAACCTCAAGAATCTGATGGTGCT
AGACCTGTCTTCCAACCATCTGACAGGTCCAATCCCATCAGGGCTGGTGAACCTTCATTTCCTTTCTGAATTCAATGTTT
CCTACAATGACCTTGAAGGGCCTGTACCAATTGGAGGCCAGTTCAGCACATTCCTAAGTTCTAGTTTTGCTGGGAACCCA
AAGCTATGCAGCCCTATGCTTGAACACCATTGCAATTCAGCGGTAGCAGCTCCAACAACCCCTATCTCCGCAAAGCAGTA
TATTGACAAGGTAGTGTTTGCAATTGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2518.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis