Browse Element(s) Details


OsAffx.24120.1.S1_at

Description tigr:9630.m00536
TID=OsAffx.24120.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g060808/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g06040NANA2+3010774..3013997retrotransposon protein, putative, unclassified
LOC_Os02g06050NANA2+3014624..3020779transposon protein, putative, unclassified
LOC_Os02g06060OsAffx.2517.1.S1_at11/112+3027549..3027803hypothetical protein
LOC_Os02g06070OsAffx.2518.1.S1_at11/112+3028946..3031111Leucine Rich Repeat family protein
LOC_Os02g06080OsAffx.24120.1.S1_at8/112+3034037..3036707hypothetical protein
LOC_Os02g06080Os.55688.1.S1_at1/112+3034037..3036707hypothetical protein
LOC_Os02g06090Os.52494.2.S1_at11/112+3037620..3039867Leucine Rich Repeat family protein, expressed
LOC_Os02g06100OsAffx.24121.3.S1_at2/112+3040887..3041192hypothetical protein
LOC_Os02g06110Os.35344.18.S1_x_at11/112+3043920..3047434transposon protein, putative, Mutator sub-class
LOC_Os02g06110Os.35344.3.S1_x_at9/112+3043920..3047434transposon protein, putative, Mutator sub-class
LOC_Os02g06110OsAffx.22940.5.S1_x_at3/112+3043920..3047434transposon protein, putative, Mutator sub-class
LOC_Os02g06120OsAffx.24122.1.S1_at11/112+3048519..3055297Leucine Rich Repeat family protein
LOC_Os02g06120OsAffx.32248.1.A1_at1/112+3048519..3055297Leucine Rich Repeat family protein
LOC_Os02g06130OsAffx.24123.1.S1_at11/112+3059575..3064559Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24120.1.S1_at--846--731Chr02:3036324..3036348 (25 bp)
ATGTTCAGGTGTGCGCATCCTATGC
LOC_Os02g06080
OsAffx.24120.1.S1_at--50--1051Chr02:3036318..3036342 (25 bp)
AGGTGTGCGCATCCTATGCTCGAAG
LOC_Os02g06080
OsAffx.24120.1.S1_at--761--3791Chr02:3036300..3036324 (25 bp)
CTCGAAGATCCTCGCATTGCGTTCT
LOC_Os02g06080
OsAffx.24120.1.S1_at--853--3791Chr02:3036290..3036314 (25 bp)
CTCGCATTGCGTTCTTTCCATATGG
LOC_Os02g06080
OsAffx.24120.1.S1_at--569--3671Chr02:3036277..3036301 (25 bp)
CTTTCCATATGGACCAGCAGACCAA
LOC_Os02g06080
OsAffx.24120.1.S1_at--502--1711Chr02:3036265..3036289 (25 bp)
ACCAGCAGACCAAGGCGACCACGAT
LOC_Os02g06080
OsAffx.24120.1.S1_at--625--1711Chr02:3036248..3036272 (25 bp)
ACCACGATGTCGAAGATGTCCCTGT
LOC_Os02g06080
OsAffx.24120.1.S1_at--558--5351NONE
GAAGATGTCCCTGTAGCCGATGGTT
NONE
OsAffx.24120.1.S1_at--333--6971NONE
GTAGCCGATGGTTGCCACATAAATC
NONE
OsAffx.24120.1.S1_at--348--9851NONE
TAAATCTAGCACATGGACTCCCATC
NONE
OsAffx.24120.1.S1_at--790--9811Chr02:3034370..3034394 (25 bp)
TAAACAGGGCCTGAAAGGCTCCCGG
LOC_Os02g06080
Target Sequence 
ATGTTCAGGTGTGCGCATCCTATGCTCGAAGATCCTCGCATTGCGTTCTTTCCATATGGACCAGCAGACCAAGGCGACCA
CGATGTCGAAGATGTCCCTGTAGCCGATGGTTGCCACATAAATCTAGCACATGGACTCCCATCTAAACAGGGCCTGAAAG
GCTCCCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24120.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis