Browse Element(s) Details


OsAffx.24123.1.S1_at

Description tigr:9630.m00541
TID=OsAffx.24123.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to disease resistance proteins
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0613011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g06080OsAffx.24120.1.S1_at8/112+3034037..3036707hypothetical protein
LOC_Os02g06080Os.55688.1.S1_at1/112+3034037..3036707hypothetical protein
LOC_Os02g06090Os.52494.2.S1_at11/112+3037620..3039867Leucine Rich Repeat family protein, expressed
LOC_Os02g06100OsAffx.24121.3.S1_at2/112+3040887..3041192hypothetical protein
LOC_Os02g06110Os.35344.18.S1_x_at11/112+3043920..3047434transposon protein, putative, Mutator sub-class
LOC_Os02g06110Os.35344.3.S1_x_at9/112+3043920..3047434transposon protein, putative, Mutator sub-class
LOC_Os02g06110OsAffx.22940.5.S1_x_at3/112+3043920..3047434transposon protein, putative, Mutator sub-class
LOC_Os02g06120OsAffx.24122.1.S1_at11/112+3048519..3055297Leucine Rich Repeat family protein
LOC_Os02g06120OsAffx.32248.1.A1_at1/112+3048519..3055297Leucine Rich Repeat family protein
LOC_Os02g06130OsAffx.24123.1.S1_at11/112+3059575..3064559Leucine Rich Repeat family protein, expressed
LOC_Os02g06140Os.52494.2.S1_at1/112+3065795..3070820retrotransposon protein, putative, unclassified
LOC_Os02g06150NANA2+3071796..3073432Leucine Rich Repeat family protein
LOC_Os02g06160OsAffx.11910.1.S1_at11/112+3076493..3078824Protein kinase domain containing protein
LOC_Os02g06170Os.38286.1.S1_at7/112+3080550..3082855expressed protein
LOC_Os02g06170OsAffx.20519.2.S1_at4/112+3080550..3082855expressed protein
LOC_Os02g06170OsAffx.20519.1.S1_at1/112+3080550..3082855expressed protein
LOC_Os02g06180OsAffx.2518.1.S1_at1/112+3084913..3087072Leucine Rich Repeat family protein, expressed
LOC_Os02g06180Os.52494.2.S1_at1/112+3084913..3087072Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007165biological_processsignal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24123.1.S1_at--943--6911Chr02:3060088..3060112 (25 bp)
GTATGTAACCACTCTATCGCGACAA
LOC_Os02g06130
OsAffx.24123.1.S1_at--1047--5591Chr02:3060068..3060092 (25 bp)
GACAATACCGTGCAGTCACATCTTT
LOC_Os02g06130
OsAffx.24123.1.S1_at--825--10271Chr02:3060046..3060070 (25 bp)
TTTCCCTGCACTCTTGAATCTTAGT
LOC_Os02g06130
OsAffx.24123.1.S1_at--764--2131Chr02:3060017..3060041 (25 bp)
ACAGCTTTACCAGTGTGATTCCACC
LOC_Os02g06130
OsAffx.24123.1.S1_at--1159--5891Chr02:3059982..3060006 (25 bp)
GAGCTGAAAGCTCTTACTCATCTTG
LOC_Os02g06130
OsAffx.24123.1.S1_at--376--8511Chr02:3059888..3059912 (25 bp)
TGGACTTGTCCAGAAACTACCTCAC
LOC_Os02g06130
OsAffx.24123.1.S1_at--1115--5831Chr02:3059789..3059813 (25 bp)
GACCTATTCCGACAGGAGGCCAGAT
LOC_Os02g06130
OsAffx.24123.1.S1_at--1049--6311Chr02:3059767..3059791 (25 bp)
GATGAACACGTTCTCAAGCTCCAGT
LOC_Os02g06130
OsAffx.24123.1.S1_at--703--1571Chr02:3059751..3059775 (25 bp)
AGCTCCAGTTTTGCCGGGAATCCAA
LOC_Os02g06130
OsAffx.24123.1.S1_at--842--10111Chr02:3059713..3059737 (25 bp)
TATGTTGGCTCCTTGTGGTTCAGTA
LOC_Os02g06130
OsAffx.24123.1.S1_at--434--2411Chr02:3059636..3059660 (25 bp)
AAACAATCTCCGCAATTGCCTTTGG
LOC_Os02g06130
Target Sequence 
GTATGTAACCACTCTATCGCGACAATACCGTGCAGTCACATCTTTCCCTGCACTCTTGAATCTTAGTGCTAACAGCTTTA
CCAGTGTGATTCCACCCAAGATTGGTGAGCTGAAAGCTCTTACTCATCTTGATTTCAGCTCTAACCAATTACAAGGAGAG
ATCCCACCATCTATCTGCAATCTCACAAACTTGCAGGTGCTGGACTTGTCCAGAAACTACCTCACTGGCCCAATACCTGA
AGCACTAAACAAGCTCAACTTTCTCTCAAAGTTCAACATTTCTGACAATGATCTGGAAGGACCTATTCCGACAGGAGGCC
AGATGAACACGTTCTCAAGCTCCAGTTTTGCCGGGAATCCAAAGCTATGTGGATCTATGTTGGCTCCTTGTGGTTCAGTA
GAGGTAGCTCACACCATCCCAACTATCTCTGAAGATCAACAATGCAGCAGCAAAACAATCTCCGCAATTGCCTTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24123.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis