Browse Element(s) Details


OsAffx.11910.1.S1_at

Description tigr:9630.m00544
TID=OsAffx.11910.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to lectin-like protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0616011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g06120OsAffx.24122.1.S1_at11/112+3048519..3055297Leucine Rich Repeat family protein
LOC_Os02g06120OsAffx.32248.1.A1_at1/112+3048519..3055297Leucine Rich Repeat family protein
LOC_Os02g06130OsAffx.24123.1.S1_at11/112+3059575..3064559Leucine Rich Repeat family protein, expressed
LOC_Os02g06140Os.52494.2.S1_at1/112+3065795..3070820retrotransposon protein, putative, unclassified
LOC_Os02g06150NANA2+3071796..3073432Leucine Rich Repeat family protein
LOC_Os02g06160OsAffx.11910.1.S1_at11/112+3076493..3078824Protein kinase domain containing protein
LOC_Os02g06170Os.38286.1.S1_at7/112+3080550..3082855expressed protein
LOC_Os02g06170OsAffx.20519.2.S1_at4/112+3080550..3082855expressed protein
LOC_Os02g06170OsAffx.20519.1.S1_at1/112+3080550..3082855expressed protein
LOC_Os02g06180OsAffx.2518.1.S1_at1/112+3084913..3087072Leucine Rich Repeat family protein, expressed
LOC_Os02g06180Os.52494.2.S1_at1/112+3084913..3087072Leucine Rich Repeat family protein, expressed
LOC_Os02g06190Os.50946.1.S1_at11/112+3092568..3095101Leucine Rich Repeat family protein, expressed
LOC_Os02g06200OsAffx.11911.1.S1_at11/112+3097245..3099377Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11910.1.S1_at--1017--2931Chr02:3078231..3078255 (25 bp)
AAGGCTAGCAACATCCTGCTTGACT
LOC_Os02g06160
OsAffx.11910.1.S1_at--166--7451Chr02:3078331..3078355 (25 bp)
GTGTCGCAGGAACATTCGGCTACAT
LOC_Os02g06160
OsAffx.11910.1.S1_at--936--5051Chr02:3078389..3078413 (25 bp)
GCAGCAGACTGACGTCTATGCGTTT
LOC_Os02g06160
OsAffx.11910.1.S1_at--897--5791Chr02:3078462..3078486 (25 bp)
GACGCACAATTTGGCCATATCACAG
LOC_Os02g06160
OsAffx.11910.1.S1_at--200--391Chr02:3078480..3078504 (25 bp)
ATCACAGATTGGGTCTGGCATCTCC
LOC_Os02g06160
OsAffx.11910.1.S1_at--204--9191Chr02:3078551..3078575 (25 bp)
TGCCGGCCATGGTGAGTTCGATATC
LOC_Os02g06160
OsAffx.11910.1.S1_at--223--2771Chr02:3078584..3078608 (25 bp)
AAGACGCTTGCTTCTTCTAGGCTTG
LOC_Os02g06160
OsAffx.11910.1.S1_at--719--8991Chr02:3078668..3078692 (25 bp)
TGCAAAATTAGCACCGGCACCGGAT
LOC_Os02g06160
OsAffx.11910.1.S1_at--164--7991Chr02:3078689..3078713 (25 bp)
GGATGTGCCACTTGAGAAGCCGACT
LOC_Os02g06160
OsAffx.11910.1.S1_at--435--1451Chr02:3078703..3078727 (25 bp)
AGAAGCCGACTGTTGTGTGCTTTCC
LOC_Os02g06160
OsAffx.11910.1.S1_at--576--10271Chr02:3078737..3078761 (25 bp)
TTTGCCAGTAGGGTCTTCATCATCT
LOC_Os02g06160
Target Sequence 
AAGGCTAGCAACATCCTGCTTGACTCCACCTTCCGTGCCCGCCTTGGTGACTTTGGTCTCGCCTGCACCGTCGCCGTCGG
CCGGAGCTCCGTCTCGTGTGGTGTCGCAGGAACATTCGGCTACATCGCCCCGGACTACGCAATTAACCTGAAAGCAACGC
AGCAGACTGACGTCTATGCGTTTGGGGTGCTGGTTCTTGAGATTGTTACTGGCAAGAAGGCGATGCTGAATGACGCACAA
TTTGGCCATATCACAGATTGGGTCTGGCATCTCCACCAACGGGGGAGGCTCCTTGAAGCTGTAGATGGCGTGCTTGGCAC
TGCCGGCCATGGTGAGTTCGATATCGAAGAGGCAAGACGCTTGCTTCTTCTAGGCTTGGCGTGCAGCAACCCGAACCCGT
CGGACCGGCCAACGATGGTGGTGGCGGTGCAGGTGATTGCAAAATTAGCACCGGCACCGGATGTGCCACTTGAGAAGCCG
ACTGTTGTGTGCTTTCCTCCTCTAACTTTGCCAGTAGGGTCTTCATCATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11910.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis