Browse Element(s) Details


Os.7672.1.S1_at

Description gb:AK071351.1
DB_XREF= gi:32981374
TID=Os.7672.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.7672 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0698H10.19 (P0698H10.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023092O22, full insert sequence.
FL= gb:AK071351.1 gb:AK099265.1 gb:AK099263.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7425011/11uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os10g198601/11myosin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g74220Os.31312.5.S1_x_at5/111+43320391..43323652retrotransposon protein, putative, unclassified
LOC_Os01g74220Os.31312.2.S1_x_at4/111+43320391..43323652retrotransposon protein, putative, unclassified
LOC_Os01g74230NANA1+43324282..43330390retrotransposon protein, putative, unclassified
LOC_Os01g74240NANA1+43333419..43336723transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g74250Os.7672.1.S1_at11/111+43343774..43345975uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os01g74260NANA1+43354520..43360668retrotransposon protein, putative, unclassified
LOC_Os01g74270NANA1+43361296..43364437retrotransposon protein, putative, unclassified
LOC_Os01g74280Os.27390.1.S1_a_at11/111+43366832..43370797mce-related family protein, putative, expressed
LOC_Os01g74280Os.27899.1.A1_x_at1/111+43366832..43370797mce-related family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0030048biological_processactin filament-based movement
GO:0016459cellular_componentmyosin
GO:0003774molecular_functionmotor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7672.1.S1_at--1019--2931Chr01:43345375..43345399 (25 bp)
AAGGCTGAAATCCTCCCTGCAGTCA
LOC_Os01g74250
Os.7672.1.S1_at--871--9931Chr01:43345408..43345432 (25 bp)
TACCGAAAGGTTGCTTATGATGCCA
LOC_Os01g74250
Os.7672.1.S1_at--370--8831Chr01:43345499..43345523 (25 bp)
TGATTCATATTTGTGCTTCTTGGAT
LOC_Os01g74250
Os.7672.1.S1_at--639--5371Chr01:43345543..43345567 (25 bp)
GAAGAATAGCTTCCCATACTTTTTT
LOC_Os01g74250
Os.7672.1.S1_at--71--1251Chr01:43345645..43345669 (25 bp)
AGTTGAGAGAGTGTGCCAGCTTTTT
LOC_Os01g74250
Os.7672.1.S1_at--290--6531Chr01:43345706..43345730 (25 bp)
GATTTCATTTTTGTTCTTCCGGCGA
LOC_Os01g74250
Os.7672.1.S1_at--65--8491Chr01:43345734..43345758 (25 bp)
TGGCTGCTAGTGGTTAATCTGCTGC
LOC_Os01g74250
Os.7672.1.S1_at--861--10353Chr10:9576718..9577031 (25 bp)
TTTTTCCTCCTTATATTCATTCTTT
LOC_Os10g19860
Os.7672.1.S1_at--10--8771Chr01:43345837..43345861 (25 bp)
TGTATTTTGAACACACTTCCTTTTC
LOC_Os01g74250
Os.7672.1.S1_at--424--3531Chr01:43345888..43345912 (25 bp)
CATGCTGTTGGTTCCCTTTGTAATA
LOC_Os01g74250
Os.7672.1.S1_at--887--6751Chr01:43345920..43345944 (25 bp)
GTTCAAGCTTAGTTACACTCTGTTT
LOC_Os01g74250
Target Sequence 
AAGGCTGAAATCCTCCCTGCAGTCAGAACTGGATACCGAAAGGTTGCTTATGATGCCAATCAAGACTGATATGAAGCGGA
GGGCAAAGTTTGAGAGGCGGCGGCGCCGTTCCTTGCTCAGCTTCTGATTCATATTTGTGCTTCTTGGATACTGAAGTACT
GAGAGAAGGAAGAATAGCTTCCCATACTTTTTTTCTGTGATAAAAGGAGTTCTTTTTAACAGTTTTGGACATACAAGGGA
AATAGATGACGGGTACTAACAAGGCAGGAGAGTTGAGAGAGTGTGCCAGCTTTTTTTTGAAGGCATATACAAAAACATAA
AATTCTTTTTGGATTTCATTTTTGTTCTTCCGGCGATGATGGCTGCTAGTGGTTAATCTGCTGCATACCATGTACAATGA
TGAGTGTTTACAGCGTTTTTTTCCTCCTTATATTCATTCTTTTATCACATAGATGGACCTTGTGTATTTTGAACACACTT
CCTTTTCCCCCTTGTTGTAGAGTGGACATGATACATGCTGTTGGTTCCCTTTGTAATAATAGAATGTTCAAGCTTAGTTA
CACTCTGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7672.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis