Browse Element(s) Details


Os.27390.1.S1_a_at

Description gb:AK121398.1
DB_XREF= gi:37991021
TID=Os.27390.1
CNT=12
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.27390 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0698H10.22 (P0698H10.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023131K04, full insert sequence.
FL= gb:AK121398.1 gb:AK064964.1 gb:AK104330.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7428011/11mce-related family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g74250Os.7672.1.S1_at11/111+43343774..43345975uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os01g74260NANA1+43354520..43360668retrotransposon protein, putative, unclassified
LOC_Os01g74270NANA1+43361296..43364437retrotransposon protein, putative, unclassified
LOC_Os01g74280Os.27390.1.S1_a_at11/111+43366832..43370797mce-related family protein, putative, expressed
LOC_Os01g74280Os.27899.1.A1_x_at1/111+43366832..43370797mce-related family protein, putative, expressed
LOC_Os01g74300Os.12410.3.S1_s_at11/111+43374103..43374519Metallothionein family protein, expressed
LOC_Os01g74300Os.12410.2.S1_at11/111+43374103..43374519Metallothionein family protein, expressed
LOC_Os01g74300Os.12410.3.S1_x_at5/111+43374103..43374519Metallothionein family protein, expressed
LOC_Os01g74300Os.12410.1.S1_x_at2/111+43374103..43374519Metallothionein family protein, expressed
LOC_Os01g74300Os.12410.1.S1_a_at1/111+43374103..43374519Metallothionein family protein, expressed
LOC_Os01g74310OsAffx.24039.2.S1_x_at11/111+43376010..43385697expressed protein
LOC_Os01g74310OsAffx.24039.1.S1_at11/111+43376010..43385697expressed protein
LOC_Os01g74310Os.26657.1.A1_at11/111+43376010..43385697expressed protein
LOC_Os01g74310Os.42948.1.S1_x_at11/111+43376010..43385697expressed protein
LOC_Os01g74310Os.26657.1.A1_s_at11/111+43376010..43385697expressed protein
LOC_Os01g74320Os.32105.1.S1_at11/111+43390588..43392280ankyrin repeat family protein, putative, expressed
LOC_Os01g74330Os.27785.1.A1_at11/111+43393540..43397014pectinacetylesterase family protein, putative, expressed
LOC_Os01g74330Os.39098.1.S1_x_at10/111+43393540..43397014pectinacetylesterase family protein, putative, expressed
LOC_Os01g74330Os.39098.1.S1_at9/111+43393540..43397014pectinacetylesterase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009941cellular_componentchloroplast envelope
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27390.1.S1_a_at--346--1151Chr01:43370087..43370111 (25 bp)
AGTCTTCCATGCTTACCCCTGAGAA
LOC_Os01g74280
Os.27390.1.S1_a_at--405--10451Chr01:43370099..43370123 (25 bp)
TTACCCCTGAGAACACCGATCTTAT
LOC_Os01g74280
Os.27390.1.S1_a_at--966--5971Chr01:43370107..43370131 (25 bp)
GAGAACACCGATCTTATTAAGCAGT
LOC_Os01g74280
Os.27390.1.S1_a_at--718--10191Chr01:43370133..43370157 (25 bp)
TATTTTCACCCTTATCTTTACTCTG
LOC_Os01g74280
Os.27390.1.S1_a_at--1088--9671Chr01:43370138..43370162 (25 bp)
TCACCCTTATCTTTACTCTGAAGAA
LOC_Os01g74280
Os.27390.1.S1_a_at--923--6011Chr01:43370278..43370301 (24 bp)
GAGAGTATCAGCTCAGACATCTCTG
LOC_Os01g74280
Os.27390.1.S1_a_at--1022--6891Chr01:43370281..43370305 (25 bp)
GTATCAGCTCAGACATCTCTGGTTT
LOC_Os01g74280
Os.27390.1.S1_a_at--644--1411Chr01:43370291..43370315 (25 bp)
AGACATCTCTGGTTTCACCGGTGAC
LOC_Os01g74280
Os.27390.1.S1_a_at--185--6831Chr01:43370302..43370326 (25 bp)
GTTTCACCGGTGACGACGCGACAAG
LOC_Os01g74280
Os.27390.1.S1_a_at--903--9671Chr01:43370305..43370329 (25 bp)
TCACCGGTGACGACGCGACAAGGCG
LOC_Os01g74280
Os.27390.1.S1_a_at--31--3231Chr01:43370348..43370372 (25 bp)
CAAGTCACTTAGCAGACTGTTGTGA
LOC_Os01g74280
Target Sequence 
AGTCTTCCATGCTTACCCCTGAGAACACCGATCTTATTAAGCAGTNTATTTTCACCCTTATCTTTACTCTGAAGAATATT
GAGAGTATCAGCTCAGACATCTCTGGTTTCACCGGTGACGACGCGACAAGGCGGAACATCAAGCTGCTTATCAAGTCACT
TAGCAGACTGTTGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27390.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis