Browse Element(s) Details


Os.27785.1.A1_at

Description gb:AK064109.1
DB_XREF= gi:32974127
TID=Os.27785.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27785 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-101-G02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-101-G02, full insert sequence.
FL= gb:AK064109.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7433011/11pectinacetylesterase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g74280Os.27390.1.S1_a_at11/111+43366832..43370797mce-related family protein, putative, expressed
LOC_Os01g74280Os.27899.1.A1_x_at1/111+43366832..43370797mce-related family protein, putative, expressed
LOC_Os01g74300Os.12410.3.S1_s_at11/111+43374103..43374519Metallothionein family protein, expressed
LOC_Os01g74300Os.12410.2.S1_at11/111+43374103..43374519Metallothionein family protein, expressed
LOC_Os01g74300Os.12410.3.S1_x_at5/111+43374103..43374519Metallothionein family protein, expressed
LOC_Os01g74300Os.12410.1.S1_x_at2/111+43374103..43374519Metallothionein family protein, expressed
LOC_Os01g74300Os.12410.1.S1_a_at1/111+43374103..43374519Metallothionein family protein, expressed
LOC_Os01g74310OsAffx.24039.2.S1_x_at11/111+43376010..43385697expressed protein
LOC_Os01g74310OsAffx.24039.1.S1_at11/111+43376010..43385697expressed protein
LOC_Os01g74310Os.26657.1.A1_at11/111+43376010..43385697expressed protein
LOC_Os01g74310Os.42948.1.S1_x_at11/111+43376010..43385697expressed protein
LOC_Os01g74310Os.26657.1.A1_s_at11/111+43376010..43385697expressed protein
LOC_Os01g74320Os.32105.1.S1_at11/111+43390588..43392280ankyrin repeat family protein, putative, expressed
LOC_Os01g74330Os.27785.1.A1_at11/111+43393540..43397014pectinacetylesterase family protein, putative, expressed
LOC_Os01g74330Os.39098.1.S1_x_at10/111+43393540..43397014pectinacetylesterase family protein, putative, expressed
LOC_Os01g74330Os.39098.1.S1_at9/111+43393540..43397014pectinacetylesterase family protein, putative, expressed
LOC_Os01g74340OsAffx.24040.1.S1_s_at11/111+43397835..43399098RNA recognition motif family protein
LOC_Os01g74340Os.21875.1.S1_at3/111+43397835..43399098RNA recognition motif family protein
LOC_Os01g74350OsAffx.11847.1.S1_at11/111+43399629..43401621Soluble inorganic pyrophosphatase, putative, expressed
LOC_Os01g74360Os.45884.1.S1_x_at3/111+43404201..4340450226S proteasome non-ATPase regulatory subunit 6, putative, expressed
LOC_Os01g74370Os.32602.1.S1_at10/111+43405650..43407248expressed protein
LOC_Os01g74370Os.32602.2.S1_x_at10/111+43405650..43407248expressed protein
LOC_Os01g74380OsAffx.22940.1.S1_s_at9/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.22940.3.S1_x_at5/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.22940.2.S1_at5/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.22940.2.S1_s_at3/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.22940.5.S1_at3/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.22940.5.S1_x_at3/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.31552.2.S1_at1/111+43408845..43409881hypothetical protein
LOC_Os01g74390Os.35344.18.S1_x_at5/111+43413021..43416776retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g74390Os.35344.3.S1_x_at3/111+43413021..43416776retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g74390OsAffx.22940.5.S1_x_at1/111+43413021..43416776retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g74400NANA1+43417397..43419265transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27785.1.A1_at--808--5931Chr01:43394503..43394527 (25 bp)
GAGCATGTCTTGACTCCAGACGGAT
LOC_Os01g74330
Os.27785.1.A1_at--558--7971Chr01:43394482..43394506 (25 bp)
GGATCTGACCCTCAAAATCTGTGGC
LOC_Os01g74330
Os.27785.1.A1_at--25--331Chr01:43394204..43394228 (25 bp)
ATACATTGCCAATCCATGAAGTCTT
LOC_Os01g74330
Os.27785.1.A1_at--247--3531Chr01:43394190..43394214 (25 bp)
CATGAAGTCTTTGGCTTGGCACTCC
LOC_Os01g74330
Os.27785.1.A1_at--286--10551Chr01:43393688..43393712 (25 bp)
TTCTTCGCCGTTGTAGTTTACCGAT
LOC_Os01g74330
Os.27785.1.A1_at--415--10271Chr01:43393661..43393685 (25 bp)
TTTGAAGCAGAATATACCCACCCCT
LOC_Os01g74330
Os.27785.1.A1_at--11--7591Chr01:43393633..43393657 (25 bp)
GGGCTCTCAGATACAGTATGTCCAG
LOC_Os01g74330
Os.27785.1.A1_at--992--6651Chr01:43393609..43393633 (25 bp)
GTTGAATGGGACACACACTAGTAGT
LOC_Os01g74330
Os.27785.1.A1_at--682--2031Chr01:43393593..43393617 (25 bp)
ACTAGTAGTAGTGCACCTCTTGAGG
LOC_Os01g74330
Os.27785.1.A1_at--436--3351Chr01:43393580..43393604 (25 bp)
CACCTCTTGAGGACCGTTCAAACAT
LOC_Os01g74330
Os.27785.1.A1_at--459--6431Chr01:43393541..43393565 (25 bp)
GATCTTGCCGTGTTGATGCCTCTAT
LOC_Os01g74330
Target Sequence 
GAGCATGTCTTGACTCCAGACGGATCTGACCCTCAAAATCTGTGGCAAGATTGCAGAATGGATATTACCAAGTGTAATAC
GAAACAGCTTGAAATTCTACAAGGTTTTAGAAAATCACTGCTTGATGCTATAAGTGAATTCAAGAAGAAAAGGGGCTGGG
GCATGTTCATTGATTCATGCTTTATACATTGCCAATCCATGAAGTCTTTGGCTTGGCACTCCCCATCTGCTTCGAGAATA
AACAATAAGACTGTGGCTGAAGCGGTGGGCGACTGGTTCTTTGATCGGAGAGAGGTGAAGGAAATAGACTGTGAATATCC
GTGCAACCCAACATGCTTCAATGTTGTTCTTGAACAACCCTATCAGGAAGGCTGACATGTGGTTCTTCGCCGTTGTAGTT
TACCGATGATTTGAAGCAGAATATACCCACCCCTATGGGGCTCTCAGATACAGTATGTCCAGTTGAATGGGACACACACT
AGTAGTAGTGCACCTCTTGAGGACCGTTCAAACATAGAAATATTGACAAGATCTTGCCGTGTTGATGCCTCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27785.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis