Browse Element(s) Details


OsAffx.11847.1.S1_at

Description tigr:9629.m07373
TID=OsAffx.11847.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=inorganic pyrophosphatase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7435011/11Soluble inorganic pyrophosphatase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g74310OsAffx.24039.2.S1_x_at11/111+43376010..43385697expressed protein
LOC_Os01g74310OsAffx.24039.1.S1_at11/111+43376010..43385697expressed protein
LOC_Os01g74310Os.26657.1.A1_at11/111+43376010..43385697expressed protein
LOC_Os01g74310Os.42948.1.S1_x_at11/111+43376010..43385697expressed protein
LOC_Os01g74310Os.26657.1.A1_s_at11/111+43376010..43385697expressed protein
LOC_Os01g74320Os.32105.1.S1_at11/111+43390588..43392280ankyrin repeat family protein, putative, expressed
LOC_Os01g74330Os.27785.1.A1_at11/111+43393540..43397014pectinacetylesterase family protein, putative, expressed
LOC_Os01g74330Os.39098.1.S1_x_at10/111+43393540..43397014pectinacetylesterase family protein, putative, expressed
LOC_Os01g74330Os.39098.1.S1_at9/111+43393540..43397014pectinacetylesterase family protein, putative, expressed
LOC_Os01g74340OsAffx.24040.1.S1_s_at11/111+43397835..43399098RNA recognition motif family protein
LOC_Os01g74340Os.21875.1.S1_at3/111+43397835..43399098RNA recognition motif family protein
LOC_Os01g74350OsAffx.11847.1.S1_at11/111+43399629..43401621Soluble inorganic pyrophosphatase, putative, expressed
LOC_Os01g74360Os.45884.1.S1_x_at3/111+43404201..4340450226S proteasome non-ATPase regulatory subunit 6, putative, expressed
LOC_Os01g74370Os.32602.1.S1_at10/111+43405650..43407248expressed protein
LOC_Os01g74370Os.32602.2.S1_x_at10/111+43405650..43407248expressed protein
LOC_Os01g74380OsAffx.22940.1.S1_s_at9/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.22940.3.S1_x_at5/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.22940.2.S1_at5/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.22940.2.S1_s_at3/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.22940.5.S1_at3/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.22940.5.S1_x_at3/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.31552.2.S1_at1/111+43408845..43409881hypothetical protein
LOC_Os01g74390Os.35344.18.S1_x_at5/111+43413021..43416776retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g74390Os.35344.3.S1_x_at3/111+43413021..43416776retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g74390OsAffx.22940.5.S1_x_at1/111+43413021..43416776retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g74400NANA1+43417397..43419265transposon protein, putative, Mutator sub-class
LOC_Os01g74410Os.408.1.S1_a_at11/111+43423249..43424821Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0016020cellular_componentmembrane
GO:0016462molecular_functionpyrophosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11847.1.S1_at--972--1211Chr01:43400869..43400893 (25 bp)
AGTTCTCTACTCTTCAGTCGTCTAT
LOC_Os01g74350
OsAffx.11847.1.S1_at--856--9391Chr01:43400852..43400876 (25 bp)
TCGTCTATCCTCACAACTATGGGTT
LOC_Os01g74350
OsAffx.11847.1.S1_at--322--3571Chr01:43400574..43400803 (25 bp)
CATAATGCAGGAGCCAGTTATCCCA
LOC_Os01g74350
OsAffx.11847.1.S1_at--991--2951Chr01:43400531..43400555 (25 bp)
AAGGCCATCGGTGTCATGCCAATGA
LOC_Os01g74350
OsAffx.11847.1.S1_at--1044--2251Chr01:43400327..43400350 (24 bp)
AAATCAGGCGTTTCTTCGAGGACTA
LOC_Os01g74350
OsAffx.11847.1.S1_at--78--6151Chr01:43399960..43399984 (25 bp)
GAGGTGGCTGTCAACGACTTCATGC
LOC_Os01g74350
OsAffx.11847.1.S1_at--249--4411Chr01:43399933..43399957 (25 bp)
GCCACTTCTGCTTATGAGACCATAC
LOC_Os01g74350
OsAffx.11847.1.S1_at--863--10131Chr01:43399817..43399841 (25 bp)
TATGCTACTTACATCCTTGAGGGCC
LOC_Os01g74350
OsAffx.11847.1.S1_at--26--1051Chr01:43399780..43399804 (25 bp)
AGGTGCCTTGTCACTGCTGGAAGAT
LOC_Os01g74350
OsAffx.11847.1.S1_at--138--10811Chr01:43399685..43399709 (25 bp)
TTGTAGCCTTGATGGCAGTACGCCC
LOC_Os01g74350
OsAffx.11847.1.S1_at--705--5011Chr01:43399671..43399695 (25 bp)
GCAGTACGCCCGACCGATAAATATT
LOC_Os01g74350
Target Sequence 
AGTTCTCTACTCTTCAGTCGTCTATCCTCACAACTATGGGTTCATTCCTCGCACGCTGTGCGACGATAGTGATCCTTTGG
ATGTGCTGGTCATAATGCAGGAGCCAGTTATCCCAGGATGCTTCCTACGGGCAAAGGCCATCGGTGTCATGCCAATGATC
GATCAGGGAGAGGCAGATGATAAGATTATTGCAGTCTGTGCTGATGATCCTGAGTACAAGCATTACAACGATATCAAGGA
CCTCCCACCTCACCGCTTAGCTGAAATCAGGCGTTTCTTCGAGGACTACAAGAAGAATGAGAATAAGGAGGTGGCTGTCA
ACGACTTCATGCCTGCCACTTCTGCTTATGAGACCATACGCCATTCCATGGATCTATATGCTACTTACATCCTTGAGGGC
CTACGCAGATAGGAGGTGCCTTGTCACTGCTGGAAGATGTTGACGAAAAAACATGGACACATTGCATTATATACGTATAT
AATACCATTCTTTCTTACTATAGATAATTTGTAGCCTTGATGGCAGTACGCCCGACCGATAAATATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11847.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis