Browse Element(s) Details


Os.39098.1.S1_x_at

Description gb:NM_189490.1
DB_XREF= gi:34906063
GEN=P0459B04.9
TID=Os.39098.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.39098 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0459B04.9 (P0459B04.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0459B04.9 (P0459B04.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7433010/11pectinacetylesterase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g74280Os.27390.1.S1_a_at11/111+43366832..43370797mce-related family protein, putative, expressed
LOC_Os01g74280Os.27899.1.A1_x_at1/111+43366832..43370797mce-related family protein, putative, expressed
LOC_Os01g74300Os.12410.3.S1_s_at11/111+43374103..43374519Metallothionein family protein, expressed
LOC_Os01g74300Os.12410.2.S1_at11/111+43374103..43374519Metallothionein family protein, expressed
LOC_Os01g74300Os.12410.3.S1_x_at5/111+43374103..43374519Metallothionein family protein, expressed
LOC_Os01g74300Os.12410.1.S1_x_at2/111+43374103..43374519Metallothionein family protein, expressed
LOC_Os01g74300Os.12410.1.S1_a_at1/111+43374103..43374519Metallothionein family protein, expressed
LOC_Os01g74310OsAffx.24039.2.S1_x_at11/111+43376010..43385697expressed protein
LOC_Os01g74310OsAffx.24039.1.S1_at11/111+43376010..43385697expressed protein
LOC_Os01g74310Os.26657.1.A1_at11/111+43376010..43385697expressed protein
LOC_Os01g74310Os.42948.1.S1_x_at11/111+43376010..43385697expressed protein
LOC_Os01g74310Os.26657.1.A1_s_at11/111+43376010..43385697expressed protein
LOC_Os01g74320Os.32105.1.S1_at11/111+43390588..43392280ankyrin repeat family protein, putative, expressed
LOC_Os01g74330Os.27785.1.A1_at11/111+43393540..43397014pectinacetylesterase family protein, putative, expressed
LOC_Os01g74330Os.39098.1.S1_x_at10/111+43393540..43397014pectinacetylesterase family protein, putative, expressed
LOC_Os01g74330Os.39098.1.S1_at9/111+43393540..43397014pectinacetylesterase family protein, putative, expressed
LOC_Os01g74340OsAffx.24040.1.S1_s_at11/111+43397835..43399098RNA recognition motif family protein
LOC_Os01g74340Os.21875.1.S1_at3/111+43397835..43399098RNA recognition motif family protein
LOC_Os01g74350OsAffx.11847.1.S1_at11/111+43399629..43401621Soluble inorganic pyrophosphatase, putative, expressed
LOC_Os01g74360Os.45884.1.S1_x_at3/111+43404201..4340450226S proteasome non-ATPase regulatory subunit 6, putative, expressed
LOC_Os01g74370Os.32602.1.S1_at10/111+43405650..43407248expressed protein
LOC_Os01g74370Os.32602.2.S1_x_at10/111+43405650..43407248expressed protein
LOC_Os01g74380OsAffx.22940.1.S1_s_at9/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.22940.3.S1_x_at5/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.22940.2.S1_at5/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.22940.2.S1_s_at3/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.22940.5.S1_at3/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.22940.5.S1_x_at3/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.31552.2.S1_at1/111+43408845..43409881hypothetical protein
LOC_Os01g74390Os.35344.18.S1_x_at5/111+43413021..43416776retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g74390Os.35344.3.S1_x_at3/111+43413021..43416776retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g74390OsAffx.22940.5.S1_x_at1/111+43413021..43416776retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g74400NANA1+43417397..43419265transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39098.1.S1_x_at--25--5111Chr01:43396633..43396657 (25 bp)
GCACGTCCTGTGATCATCGCAAGAA
LOC_Os01g74330
Os.39098.1.S1_x_at--726--9591Chr01:43396602..43396626 (25 bp)
TCTTGGCTCATCTGCTTACATGGAA
LOC_Os01g74330
Os.39098.1.S1_x_at--681--10511Chr01:43396283..43396307 (25 bp)
TTCACTTCACCACATTTTCTTACTT
LOC_Os01g74330
Os.39098.1.S1_x_at--11--10491Chr01:43396264..43396288 (25 bp)
TTACTTGTTCTACTGTACTGCGCCG
LOC_Os01g74330
Os.39098.1.S1_x_at--478--7131Chr01:43396240..43396264 (25 bp)
GTCATTCTCTACAGTATGGCGCCAC
LOC_Os01g74330
Os.39098.1.S1_x_at--80--2051Chr01:43396217..43396241 (25 bp)
ACTTTCTTCTTCAGAGGCCAGCGCA
LOC_Os01g74330
Os.39098.1.S1_x_at--325--831Chr01:43396178..43396202 (25 bp)
ATGGCTGAACTTCTACCCAAGGGTC
LOC_Os01g74330
Os.39098.1.S1_x_at--1027--1911Chr01:43394827..43394851 (25 bp)
ACGGTTCCCTGGTTGTAGTTCAGAT
LOC_Os01g74330
Os.39098.1.S1_x_at--882--1071Chr01:43394678..43394818 (25 bp)
AGGGCAGTGCTTTTTCCCACAAGAA
LOC_Os01g74330
Os.39098.1.S1_x_at--249--8831NONE
TGATGTTTGGCAGACTGTGGCTGAA
NONE
Os.39098.1.S1_x_at--1008--5711Chr01:43393764..43393788 (25 bp)
GACTGTGAATATCCGTGCAACCCAA
LOC_Os01g74330
Target Sequence 
GCACGTCCTGTGATCATCGCAAGAAAACCAGTCTTGGCTCATCTGCTTACATGGAAACCCGGGTCGAGTTCGTCGGCATC
CTGAGCGACGACAAGGCCCAGAACCCAGTCACCATACCCTACACTCCCCACTTCACTTCACCACATTTTCTTACTTGTTC
TACTGTACTGCGCCGTCATTCTCTACAGTATGGCGCCACTTTCTTCTTCAGAGGCCAGCGCATCTGGGAGGCCGTCATGG
CTGAACTTCTACCCAAGGGTCTAGCCCGTGCTAAACAGGGAAGACATTTCTGGGAGAAGGATTTGCGGAAACGGTTCCCT
GGTTGTAGTTCAGATATGGAACCAGGGCAGTGCTTTTTCCCACAAGAAGTGGCGAAAGGCATCACCACCCCAATGTTTAT
TCTCAATCCAGCATATGATGTTTGGCAGACTGTGGCTGAAGCGGTGGGCGACTGGTTCTTTGATCGGAGAGAGGTGAAGG
AAATAGACTGTGAATATCCGTGCAACCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39098.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis