Browse Element(s) Details


Os.12410.3.S1_s_at

Description gb:NM_189487.1
DB_XREF= gi:34906057
GEN=P0698H10.24
TID=Os.12410.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.12410 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0698H10.24 (P0698H10.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0698H10.24 (P0698H10.24), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7430011/11Metallothionein family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g74260NANA1+43354520..43360668retrotransposon protein, putative, unclassified
LOC_Os01g74270NANA1+43361296..43364437retrotransposon protein, putative, unclassified
LOC_Os01g74280Os.27390.1.S1_a_at11/111+43366832..43370797mce-related family protein, putative, expressed
LOC_Os01g74280Os.27899.1.A1_x_at1/111+43366832..43370797mce-related family protein, putative, expressed
LOC_Os01g74300Os.12410.3.S1_s_at11/111+43374103..43374519Metallothionein family protein, expressed
LOC_Os01g74300Os.12410.2.S1_at11/111+43374103..43374519Metallothionein family protein, expressed
LOC_Os01g74300Os.12410.3.S1_x_at5/111+43374103..43374519Metallothionein family protein, expressed
LOC_Os01g74300Os.12410.1.S1_x_at2/111+43374103..43374519Metallothionein family protein, expressed
LOC_Os01g74300Os.12410.1.S1_a_at1/111+43374103..43374519Metallothionein family protein, expressed
LOC_Os01g74310OsAffx.24039.2.S1_x_at11/111+43376010..43385697expressed protein
LOC_Os01g74310OsAffx.24039.1.S1_at11/111+43376010..43385697expressed protein
LOC_Os01g74310Os.26657.1.A1_at11/111+43376010..43385697expressed protein
LOC_Os01g74310Os.42948.1.S1_x_at11/111+43376010..43385697expressed protein
LOC_Os01g74310Os.26657.1.A1_s_at11/111+43376010..43385697expressed protein
LOC_Os01g74320Os.32105.1.S1_at11/111+43390588..43392280ankyrin repeat family protein, putative, expressed
LOC_Os01g74330Os.27785.1.A1_at11/111+43393540..43397014pectinacetylesterase family protein, putative, expressed
LOC_Os01g74330Os.39098.1.S1_x_at10/111+43393540..43397014pectinacetylesterase family protein, putative, expressed
LOC_Os01g74330Os.39098.1.S1_at9/111+43393540..43397014pectinacetylesterase family protein, putative, expressed
LOC_Os01g74340OsAffx.24040.1.S1_s_at11/111+43397835..43399098RNA recognition motif family protein
LOC_Os01g74340Os.21875.1.S1_at3/111+43397835..43399098RNA recognition motif family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006878biological_processcopper ion homeostasis
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12410.3.S1_s_at--683--3211Chr01:43374235..43374259 (25 bp)
CAAGTACTCTGAGGTGGAACCCACG
LOC_Os01g74300
Os.12410.3.S1_s_at--383--2831Chr01:43374236..43374260 (25 bp)
AAGTACTCTGAGGTGGAACCCACGA
LOC_Os01g74300
Os.12410.3.S1_s_at--741--1171Chr01:43374237..43374261 (25 bp)
AGTACTCTGAGGTGGAACCCACGAC
LOC_Os01g74300
Os.12410.3.S1_s_at--404--6991Chr01:43374238..43374262 (25 bp)
GTACTCTGAGGTGGAACCCACGACC
LOC_Os01g74300
Os.12410.3.S1_s_at--1036--9891Chr01:43374239..43374263 (25 bp)
TACTCTGAGGTGGAACCCACGACCA
LOC_Os01g74300
Os.12410.3.S1_s_at--254--9471Chr01:43374242..43374266 (25 bp)
TCTGAGGTGGAACCCACGACCACGA
LOC_Os01g74300
Os.12410.3.S1_s_at--681--8711Chr01:43374244..43374268 (25 bp)
TGAGGTGGAACCCACGACCACGACC
LOC_Os01g74300
Os.12410.3.S1_s_at--128--7191Chr01:43374408..43374432 (25 bp)
GTCTGGTGCTGCTTCCGGAGGATCA
LOC_Os01g74300
Os.12410.3.S1_s_at--385--9471Chr01:43374409..43374433 (25 bp)
TCTGGTGCTGCTTCCGGAGGATCAG
LOC_Os01g74300
Os.12410.3.S1_s_at--737--7311Chr01:43374413..43374437 (25 bp)
GTGCTGCTTCCGGAGGATCAGAGAT
LOC_Os01g74300
Os.12410.3.S1_s_at--920--9111Chr01:43374414..43374438 (25 bp)
TGCTGCTTCCGGAGGATCAGAGATG
LOC_Os01g74300
Target Sequence 
CAAGTACTCTGAGGTGGAACCCACGACCACGACCACCTTCCTTGCCGATGCAACCAACAAGGGGTATGTCTGGTGCTGCT
TCCGGAGGATCAGAGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12410.3.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis