Browse Element(s) Details


Os.12410.1.S1_a_at

Description gb:AF017365.1
DB_XREF= gi:2407284
TID=Os.12410.1
CNT=165
FEA=FLmRNA
TIER=FL+Stack
STK=110
UG=Os.12410 (NCBI UniGene Cluster)
DEF=Oryza sativa metallothionein-like protein mRNA, complete cds.
PROD=metallothionein-like protein
FL= gb:AB002820.1 gb:AF017365.1 gb:AK104075.1 gb:AK062796.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g743001/11Metallothionein family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g74260NANA1+43354520..43360668retrotransposon protein, putative, unclassified
LOC_Os01g74270NANA1+43361296..43364437retrotransposon protein, putative, unclassified
LOC_Os01g74280Os.27390.1.S1_a_at11/111+43366832..43370797mce-related family protein, putative, expressed
LOC_Os01g74280Os.27899.1.A1_x_at1/111+43366832..43370797mce-related family protein, putative, expressed
LOC_Os01g74300Os.12410.3.S1_s_at11/111+43374103..43374519Metallothionein family protein, expressed
LOC_Os01g74300Os.12410.2.S1_at11/111+43374103..43374519Metallothionein family protein, expressed
LOC_Os01g74300Os.12410.3.S1_x_at5/111+43374103..43374519Metallothionein family protein, expressed
LOC_Os01g74300Os.12410.1.S1_x_at2/111+43374103..43374519Metallothionein family protein, expressed
LOC_Os01g74300Os.12410.1.S1_a_at1/111+43374103..43374519Metallothionein family protein, expressed
LOC_Os01g74310OsAffx.24039.2.S1_x_at11/111+43376010..43385697expressed protein
LOC_Os01g74310OsAffx.24039.1.S1_at11/111+43376010..43385697expressed protein
LOC_Os01g74310Os.26657.1.A1_at11/111+43376010..43385697expressed protein
LOC_Os01g74310Os.42948.1.S1_x_at11/111+43376010..43385697expressed protein
LOC_Os01g74310Os.26657.1.A1_s_at11/111+43376010..43385697expressed protein
LOC_Os01g74320Os.32105.1.S1_at11/111+43390588..43392280ankyrin repeat family protein, putative, expressed
LOC_Os01g74330Os.27785.1.A1_at11/111+43393540..43397014pectinacetylesterase family protein, putative, expressed
LOC_Os01g74330Os.39098.1.S1_x_at10/111+43393540..43397014pectinacetylesterase family protein, putative, expressed
LOC_Os01g74330Os.39098.1.S1_at9/111+43393540..43397014pectinacetylesterase family protein, putative, expressed
LOC_Os01g74340OsAffx.24040.1.S1_s_at11/111+43397835..43399098RNA recognition motif family protein
LOC_Os01g74340Os.21875.1.S1_at3/111+43397835..43399098RNA recognition motif family protein

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Gene Ontology Classification
GO idTypeName
GO:0006878biological_processcopper ion homeostasis
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12410.1.S1_a_at--652--8231Chr01:43374118..43374142 (25 bp)
GGCAACTGCGGATGCGGCTCCAGCT
LOC_Os01g74300
Os.12410.1.S1_a_at--434--3711Chr01:43374516..43374540 (25 bp)
CTAGAAGAAACTTATCTCCATCCAA
NONE
Os.12410.1.S1_a_at--17--10031Chr01:43374517..43374541 (25 bp)
TAGAAGAAACTTATCTCCATCCAAT
NONE
Os.12410.1.S1_a_at--697--1452Chr01:43374518..43374542 (25 bp)
AGAAGAAACTTATCTCCATCCAATT
NONE
Os.12410.1.S1_a_at--964--5351Chr01:43374519..43374543 (25 bp)
GAAGAAACTTATCTCCATCCAATTC
NONE
Os.12410.1.S1_a_at--201--2751Chr01:43374520..43374544 (25 bp)
AAGAAACTTATCTCCATCCAATTCA
NONE
Os.12410.1.S1_a_at--224--1431Chr01:43374521..43374545 (25 bp)
AGAAACTTATCTCCATCCAATTCAT
NONE
Os.12410.1.S1_a_at--1045--5531Chr01:43374522..43374546 (25 bp)
GAAACTTATCTCCATCCAATTCATC
NONE
Os.12410.1.S1_a_at--943--2391Chr01:43374523..43374547 (25 bp)
AAACTTATCTCCATCCAATTCATCA
NONE
Os.12410.1.S1_a_at--234--2531Chr01:43374524..43374548 (25 bp)
AACTTATCTCCATCCAATTCATCAC
NONE
Os.12410.1.S1_a_at--394--3671Chr01:43374526..43374550 (25 bp)
CTTATCTCCATCCAATTCATCACCT
NONE
Target Sequence 
GGCAACTGCGGATGCGGCTCCAGCTGCCAGTGCGGCAACGGCTGCGGCGGATGCAAGTACTCTGAGGTGGAACCCACGAC
CACGACCACCTTCCTTGCCGATGCAACCAACAAGGGGTCTGGTGCTGCTTCCGGAGGATCAGAGATGGGGGCGGAGAACG
GCAGCTGCGGCTGCAACACCTGCAAGTGCGGCACCAGCTGCGGCTGCTCCTGCTGCAACTGCAACTAGAAGAAACTTATC
TCCATCCAATTCATCACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12410.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis