Browse Element(s) Details


Os.42948.1.S1_x_at

Description gb:NM_189488.1
DB_XREF= gi:34906059
GEN=P0698H10.25
TID=Os.42948.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.42948 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0698H10.25 (P0698H10.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0698H10.25 (P0698H10.25), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7431011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g74260NANA1+43354520..43360668retrotransposon protein, putative, unclassified
LOC_Os01g74270NANA1+43361296..43364437retrotransposon protein, putative, unclassified
LOC_Os01g74280Os.27390.1.S1_a_at11/111+43366832..43370797mce-related family protein, putative, expressed
LOC_Os01g74280Os.27899.1.A1_x_at1/111+43366832..43370797mce-related family protein, putative, expressed
LOC_Os01g74300Os.12410.3.S1_s_at11/111+43374103..43374519Metallothionein family protein, expressed
LOC_Os01g74300Os.12410.2.S1_at11/111+43374103..43374519Metallothionein family protein, expressed
LOC_Os01g74300Os.12410.3.S1_x_at5/111+43374103..43374519Metallothionein family protein, expressed
LOC_Os01g74300Os.12410.1.S1_x_at2/111+43374103..43374519Metallothionein family protein, expressed
LOC_Os01g74300Os.12410.1.S1_a_at1/111+43374103..43374519Metallothionein family protein, expressed
LOC_Os01g74310OsAffx.24039.2.S1_x_at11/111+43376010..43385697expressed protein
LOC_Os01g74310OsAffx.24039.1.S1_at11/111+43376010..43385697expressed protein
LOC_Os01g74310Os.26657.1.A1_at11/111+43376010..43385697expressed protein
LOC_Os01g74310Os.42948.1.S1_x_at11/111+43376010..43385697expressed protein
LOC_Os01g74310Os.26657.1.A1_s_at11/111+43376010..43385697expressed protein
LOC_Os01g74320Os.32105.1.S1_at11/111+43390588..43392280ankyrin repeat family protein, putative, expressed
LOC_Os01g74330Os.27785.1.A1_at11/111+43393540..43397014pectinacetylesterase family protein, putative, expressed
LOC_Os01g74330Os.39098.1.S1_x_at10/111+43393540..43397014pectinacetylesterase family protein, putative, expressed
LOC_Os01g74330Os.39098.1.S1_at9/111+43393540..43397014pectinacetylesterase family protein, putative, expressed
LOC_Os01g74340OsAffx.24040.1.S1_s_at11/111+43397835..43399098RNA recognition motif family protein
LOC_Os01g74340Os.21875.1.S1_at3/111+43397835..43399098RNA recognition motif family protein
LOC_Os01g74350OsAffx.11847.1.S1_at11/111+43399629..43401621Soluble inorganic pyrophosphatase, putative, expressed
LOC_Os01g74360Os.45884.1.S1_x_at3/111+43404201..4340450226S proteasome non-ATPase regulatory subunit 6, putative, expressed
LOC_Os01g74370Os.32602.1.S1_at10/111+43405650..43407248expressed protein
LOC_Os01g74370Os.32602.2.S1_x_at10/111+43405650..43407248expressed protein
LOC_Os01g74380OsAffx.22940.1.S1_s_at9/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.22940.3.S1_x_at5/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.22940.2.S1_at5/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.22940.2.S1_s_at3/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.22940.5.S1_at3/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.22940.5.S1_x_at3/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.31552.2.S1_at1/111+43408845..43409881hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42948.1.S1_x_at--731--5131Chr01:43379114..43379138 (25 bp)
GCAAACATCGCCTGGACAAAGCTTT
LOC_Os01g74310
Os.42948.1.S1_x_at--490--3451Chr01:43379068..43379092 (25 bp)
CAGTGCTTTGTTGCTTGTGGTCCAA
LOC_Os01g74310
Os.42948.1.S1_x_at--281--8911Chr01:43378203..43378227 (25 bp)
TGAGACTGCCATCTTCAAATGTGAT
LOC_Os01g74310
Os.42948.1.S1_x_at--721--6331Chr01:43378181..43378205 (25 bp)
GATGCATATGGGTGGGCTTCAATCC
LOC_Os01g74310
Os.42948.1.S1_x_at--170--9691Chr01:43378163..43378187 (25 bp)
TCAATCCCTTGGTCAACTTTTTGGT
LOC_Os01g74310
Os.42948.1.S1_x_at--349--491Chr01:43378113..43378137 (25 bp)
ATCTGGAAACTCTTGCGTCGCATCA
LOC_Os01g74310
Os.42948.1.S1_x_at--334--10471Chr01:43378012..43378036 (25 bp)
TTACTCTCCGAGACATCAATGGCAG
LOC_Os01g74310
Os.42948.1.S1_x_at--575--5051Chr01:43377991..43378015 (25 bp)
GCAGCACTACTTCTGAGAGGCCTTG
LOC_Os01g74310
Os.42948.1.S1_x_at--1094--1291Chr01:43377976..43378000 (25 bp)
AGAGGCCTTGCGATAGCTCCTATGC
LOC_Os01g74310
Os.42948.1.S1_x_at--568--10131Chr01:43377956..43377980 (25 bp)
TATGCAGCTTGTAGCACGCGTACCA
LOC_Os01g74310
Os.42948.1.S1_x_at--69--2531Chr01:43377932..43377956 (25 bp)
AACTTCATTGTTTTTCTGGCCATTG
LOC_Os01g74310
Target Sequence 
GCAAACATCGCCTGGACAAAGCTTTTGCGGTTATAGATATTATGAACAGTGCTTTGTTGCTTGTGGTCCAAAATAATGAG
ACAGACCATATTAACATCTTAAAGATGTGTGATATGTTGTTTTCTCAATTATGTCTGAGACTGCCATCTTCAAATGTGAT
GCATATGGGTGGGCTTCAATCCCTTGGTCAACTTTTTGGTTGTACAACTAAGAACATCGAGAGCCATCTGGAAACTCTTG
CGTCGCATCAAAATGTTGGAAACAAGAACTTTTGCAGGAGTGAGACATTGCAAGACATAAGCGTAAATCAAACTGCTCAA
ACCACTTTACTCTCCGAGACATCAATGGCAGCACTACTTCTGAGAGGCCTTGCGATAGCTCCTATGCAGCTTGTAGCACG
CGTACCAACTTCATTGTTTTTCTGGCCATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42948.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis