Browse Element(s) Details


Os.45884.1.S1_x_at

Description gb:AA752404
DB_XREF= gi:2799415
DB_XREF=96MJ0081
CLONE=96MJ0081
TID=Os.45884.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45884 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0459B04.10 (P0459B04.10), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g743603/1126S proteasome non-ATPase regulatory subunit 6, putative, expressed
LOC_Os08g139801/11Glycosyl hydrolases family 16 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g74310OsAffx.24039.2.S1_x_at11/111+43376010..43385697expressed protein
LOC_Os01g74310OsAffx.24039.1.S1_at11/111+43376010..43385697expressed protein
LOC_Os01g74310Os.26657.1.A1_at11/111+43376010..43385697expressed protein
LOC_Os01g74310Os.42948.1.S1_x_at11/111+43376010..43385697expressed protein
LOC_Os01g74310Os.26657.1.A1_s_at11/111+43376010..43385697expressed protein
LOC_Os01g74320Os.32105.1.S1_at11/111+43390588..43392280ankyrin repeat family protein, putative, expressed
LOC_Os01g74330Os.27785.1.A1_at11/111+43393540..43397014pectinacetylesterase family protein, putative, expressed
LOC_Os01g74330Os.39098.1.S1_x_at10/111+43393540..43397014pectinacetylesterase family protein, putative, expressed
LOC_Os01g74330Os.39098.1.S1_at9/111+43393540..43397014pectinacetylesterase family protein, putative, expressed
LOC_Os01g74340OsAffx.24040.1.S1_s_at11/111+43397835..43399098RNA recognition motif family protein
LOC_Os01g74340Os.21875.1.S1_at3/111+43397835..43399098RNA recognition motif family protein
LOC_Os01g74350OsAffx.11847.1.S1_at11/111+43399629..43401621Soluble inorganic pyrophosphatase, putative, expressed
LOC_Os01g74360Os.45884.1.S1_x_at3/111+43404201..4340450226S proteasome non-ATPase regulatory subunit 6, putative, expressed
LOC_Os01g74370Os.32602.1.S1_at10/111+43405650..43407248expressed protein
LOC_Os01g74370Os.32602.2.S1_x_at10/111+43405650..43407248expressed protein
LOC_Os01g74380OsAffx.22940.1.S1_s_at9/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.22940.3.S1_x_at5/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.22940.2.S1_at5/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.22940.2.S1_s_at3/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.22940.5.S1_at3/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.22940.5.S1_x_at3/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.31552.2.S1_at1/111+43408845..43409881hypothetical protein
LOC_Os01g74390Os.35344.18.S1_x_at5/111+43413021..43416776retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g74390Os.35344.3.S1_x_at3/111+43413021..43416776retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g74390OsAffx.22940.5.S1_x_at1/111+43413021..43416776retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g74400NANA1+43417397..43419265transposon protein, putative, Mutator sub-class
LOC_Os01g74410Os.408.1.S1_a_at11/111+43423249..43424821Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0009664biological_processcell wall organization and biogenesis (sensu Magnoliophyta)
GO:0030163biological_processprotein catabolism
GO:0005618cellular_componentcell wall
GO:0005634cellular_componentnucleus
GO:0008541cellular_componentproteasome regulatory particle, lid subcomplex (sensu Eukaryota)
GO:0016798molecular_functionhydrolase activity, acting on glycosyl bonds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45884.1.S1_x_at--115--3371Chr01:43403120..43403144 (25 bp)
CACCGCGCGCCACCATGGATGGGAT
NONE
Os.45884.1.S1_x_at--605--6251Chr01:43403142..43403166 (25 bp)
GATGGGAGTAGGTGATACTGATACC
NONE
Os.45884.1.S1_x_at--983--8831Chr01:43403154..43403178 (25 bp)
TGATACTGATACCTGGAGCGCGGCA
NONE
Os.45884.1.S1_x_at--722--6471Chr01:43403155..43403179 (25 bp)
GATACTGATACCTGGAGCGCGGCAG
NONE
Os.45884.1.S1_x_at--2--8171Chr01:43403192..43403216 (25 bp)
GGAAGGAGGCGACCCAGAACCTCTT
NONE
Os.45884.1.S1_x_at--448--991Chr01:43403195..43403219 (25 bp)
AGGAGGCGACCCAGAACCTCTTCTC
NONE
Os.45884.1.S1_x_at--107--8372Chr01:43403740..43403764 (25 bp)
GGCGGGCCGGCGTTGCGAGGCAGGA
NONE
Os.45884.1.S1_x_at--350--7651Chr01:43403826..43403850 (25 bp)
GGGAGGGCCAGCTGCCTGTCTGCCC
NONE
Os.45884.1.S1_x_at--186--7711Chr01:43404271..43404295 (25 bp)
GGGTGCTAGCCCACAAGCTCTTCCT
LOC_Os01g74360
Os.45884.1.S1_x_at--1085--7072Chr01:43404360..43404384 (25 bp)
GTCAAGTCCGATGGCATGGCGCTGC
LOC_Os01g74360
Os.45884.1.S1_x_at--793--851Chr01:43404370..43404394 (25 bp)
ATGGCATGGCGCTGCTATTTGAGTC
LOC_Os01g74360
Target Sequence 
CACCGCGCGCCACCATGGATGGGATGGGAGTAGGTGATACTGATACCTGGAGCGCGGCAGCCCAGACGAGGAGGAAGGAG
GCGACCCAGAACCTCTTCTCCTTCACCACCCTCCTCATCGGCGGCCGGCAAGCGGGGAGGAGGCCGGCGGGCCGGCGTTG
CGAGGCAGGAGAGGAGGTGCGGCAACCGGCGGAGGCGGCGGGAGCACAGGGGGAGGCGAAGGGGGAGCATGGGGAGGGCC
AGCTGCCTGTCTGCCCCGACACCNNCGNNNNNNCNNNNNCCNNNGNGAACGACATGGATGCCGGCAGNGAGGAGGCGAAG
NAGGAGCAGNACCGGGTGCTAGCCCACAAGCTCTTCCTCCTCTCCCACCCCGACCTCAACGACCTCGCCANGGTTGCCCT
CCGCTCCGACGCCCTCGANGCCGTCAAGTCCGATGGCATGGCGCTGCTATTTGAGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45884.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis