Browse Element(s) Details


Os.39098.1.S1_at

Description gb:NM_189490.1
DB_XREF= gi:34906063
GEN=P0459B04.9
TID=Os.39098.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.39098 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0459B04.9 (P0459B04.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0459B04.9 (P0459B04.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g743309/11pectinacetylesterase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g74280Os.27390.1.S1_a_at11/111+43366832..43370797mce-related family protein, putative, expressed
LOC_Os01g74280Os.27899.1.A1_x_at1/111+43366832..43370797mce-related family protein, putative, expressed
LOC_Os01g74300Os.12410.3.S1_s_at11/111+43374103..43374519Metallothionein family protein, expressed
LOC_Os01g74300Os.12410.2.S1_at11/111+43374103..43374519Metallothionein family protein, expressed
LOC_Os01g74300Os.12410.3.S1_x_at5/111+43374103..43374519Metallothionein family protein, expressed
LOC_Os01g74300Os.12410.1.S1_x_at2/111+43374103..43374519Metallothionein family protein, expressed
LOC_Os01g74300Os.12410.1.S1_a_at1/111+43374103..43374519Metallothionein family protein, expressed
LOC_Os01g74310OsAffx.24039.2.S1_x_at11/111+43376010..43385697expressed protein
LOC_Os01g74310OsAffx.24039.1.S1_at11/111+43376010..43385697expressed protein
LOC_Os01g74310Os.26657.1.A1_at11/111+43376010..43385697expressed protein
LOC_Os01g74310Os.42948.1.S1_x_at11/111+43376010..43385697expressed protein
LOC_Os01g74310Os.26657.1.A1_s_at11/111+43376010..43385697expressed protein
LOC_Os01g74320Os.32105.1.S1_at11/111+43390588..43392280ankyrin repeat family protein, putative, expressed
LOC_Os01g74330Os.27785.1.A1_at11/111+43393540..43397014pectinacetylesterase family protein, putative, expressed
LOC_Os01g74330Os.39098.1.S1_x_at10/111+43393540..43397014pectinacetylesterase family protein, putative, expressed
LOC_Os01g74330Os.39098.1.S1_at9/111+43393540..43397014pectinacetylesterase family protein, putative, expressed
LOC_Os01g74340OsAffx.24040.1.S1_s_at11/111+43397835..43399098RNA recognition motif family protein
LOC_Os01g74340Os.21875.1.S1_at3/111+43397835..43399098RNA recognition motif family protein
LOC_Os01g74350OsAffx.11847.1.S1_at11/111+43399629..43401621Soluble inorganic pyrophosphatase, putative, expressed
LOC_Os01g74360Os.45884.1.S1_x_at3/111+43404201..4340450226S proteasome non-ATPase regulatory subunit 6, putative, expressed
LOC_Os01g74370Os.32602.1.S1_at10/111+43405650..43407248expressed protein
LOC_Os01g74370Os.32602.2.S1_x_at10/111+43405650..43407248expressed protein
LOC_Os01g74380OsAffx.22940.1.S1_s_at9/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.22940.3.S1_x_at5/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.22940.2.S1_at5/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.22940.2.S1_s_at3/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.22940.5.S1_at3/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.22940.5.S1_x_at3/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.31552.2.S1_at1/111+43408845..43409881hypothetical protein
LOC_Os01g74390Os.35344.18.S1_x_at5/111+43413021..43416776retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g74390Os.35344.3.S1_x_at3/111+43413021..43416776retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g74390OsAffx.22940.5.S1_x_at1/111+43413021..43416776retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g74400NANA1+43417397..43419265transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39098.1.S1_at--590--9671Chr01:43396277..43396301 (25 bp)
TCACCACATTTTCTTACTTGTTCTA
LOC_Os01g74330
Os.39098.1.S1_at--543--4371Chr01:43396274..43396298 (25 bp)
CCACATTTTCTTACTTGTTCTACTG
LOC_Os01g74330
Os.39098.1.S1_at--88--9571Chr01:43396266..43396290 (25 bp)
TCTTACTTGTTCTACTGTACTGCGC
LOC_Os01g74330
Os.39098.1.S1_at--12--10491Chr01:43396264..43396288 (25 bp)
TTACTTGTTCTACTGTACTGCGCCG
LOC_Os01g74330
Os.39098.1.S1_at--578--2051Chr01:43396262..43396286 (25 bp)
ACTTGTTCTACTGTACTGCGCCGTC
LOC_Os01g74330
Os.39098.1.S1_at--672--8751Chr01:43396251..43396275 (25 bp)
TGTACTGCGCCGTCATTCTCTACAG
LOC_Os01g74330
Os.39098.1.S1_at--163--9171Chr01:43396246..43396270 (25 bp)
TGCGCCGTCATTCTCTACAGTATGG
LOC_Os01g74330
Os.39098.1.S1_at--918--4491Chr01:43396243..43396267 (25 bp)
GCCGTCATTCTCTACAGTATGGCGC
LOC_Os01g74330
Os.39098.1.S1_at--955--9591Chr01:43396239..43396263 (25 bp)
TCATTCTCTACAGTATGGCGCCACT
LOC_Os01g74330
Os.39098.1.S1_at--598--4231NONE
CCGTGCTAAACAGGGAAGACATTTC
NONE
Os.39098.1.S1_at--248--8831NONE
TGATGTTTGGCAGACTGTGGCTGAA
NONE
Target Sequence 
TCACCACATTTTCTTACTTGTTCTACTGTACTGCGCCGTCATTCTCTACAGTATGGCGCCACTTTCTTCTTCAGAGGCCA
GCGCATCTGGGAGGCCGTCATGGCTGAACTTCTACCCAAGGGTCTAGCCCGTGCTAAACAGGGAAGACATTTCTGGGAGA
AGGATTTGCGGAAACGGTTCCCTGGTTGTAGTTCAGATATGGAACCAGGGCAGTGCTTTTTCCCACAAGAAGTGGCGAAA
GGCATCACCACCCCAATGTTTATTCTCAATCCAGCATATGATGTTTGGCAGACTGTGGCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39098.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis