Browse Element(s) Details


Os.21875.1.S1_at

Description gb:CA757906
DB_XREF= gi:25801945
DB_XREF=OE12B05_T3.ab1
CLONE=OE12B05_T3.ab1
TID=Os.21875.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.21875 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_200911.1 (A.thaliana) RNA-binding protein - like (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g743403/11RNA recognition motif family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g74300Os.12410.3.S1_s_at11/111+43374103..43374519Metallothionein family protein, expressed
LOC_Os01g74300Os.12410.2.S1_at11/111+43374103..43374519Metallothionein family protein, expressed
LOC_Os01g74300Os.12410.3.S1_x_at5/111+43374103..43374519Metallothionein family protein, expressed
LOC_Os01g74300Os.12410.1.S1_x_at2/111+43374103..43374519Metallothionein family protein, expressed
LOC_Os01g74300Os.12410.1.S1_a_at1/111+43374103..43374519Metallothionein family protein, expressed
LOC_Os01g74310OsAffx.24039.2.S1_x_at11/111+43376010..43385697expressed protein
LOC_Os01g74310OsAffx.24039.1.S1_at11/111+43376010..43385697expressed protein
LOC_Os01g74310Os.26657.1.A1_at11/111+43376010..43385697expressed protein
LOC_Os01g74310Os.42948.1.S1_x_at11/111+43376010..43385697expressed protein
LOC_Os01g74310Os.26657.1.A1_s_at11/111+43376010..43385697expressed protein
LOC_Os01g74320Os.32105.1.S1_at11/111+43390588..43392280ankyrin repeat family protein, putative, expressed
LOC_Os01g74330Os.27785.1.A1_at11/111+43393540..43397014pectinacetylesterase family protein, putative, expressed
LOC_Os01g74330Os.39098.1.S1_x_at10/111+43393540..43397014pectinacetylesterase family protein, putative, expressed
LOC_Os01g74330Os.39098.1.S1_at9/111+43393540..43397014pectinacetylesterase family protein, putative, expressed
LOC_Os01g74340OsAffx.24040.1.S1_s_at11/111+43397835..43399098RNA recognition motif family protein
LOC_Os01g74340Os.21875.1.S1_at3/111+43397835..43399098RNA recognition motif family protein
LOC_Os01g74350OsAffx.11847.1.S1_at11/111+43399629..43401621Soluble inorganic pyrophosphatase, putative, expressed
LOC_Os01g74360Os.45884.1.S1_x_at3/111+43404201..4340450226S proteasome non-ATPase regulatory subunit 6, putative, expressed
LOC_Os01g74370Os.32602.1.S1_at10/111+43405650..43407248expressed protein
LOC_Os01g74370Os.32602.2.S1_x_at10/111+43405650..43407248expressed protein
LOC_Os01g74380OsAffx.22940.1.S1_s_at9/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.22940.3.S1_x_at5/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.22940.2.S1_at5/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.22940.2.S1_s_at3/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.22940.5.S1_at3/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.22940.5.S1_x_at3/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.31552.2.S1_at1/111+43408845..43409881hypothetical protein
LOC_Os01g74390Os.35344.18.S1_x_at5/111+43413021..43416776retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g74390Os.35344.3.S1_x_at3/111+43413021..43416776retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g74390OsAffx.22940.5.S1_x_at1/111+43413021..43416776retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g74400NANA1+43417397..43419265transposon protein, putative, Mutator sub-class
LOC_Os01g74410Os.408.1.S1_a_at11/111+43423249..43424821Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0005763cellular_componentmitochondrial small ribosomal subunit
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21875.1.S1_at--622--7671Chr01:43398438..43398462 (25 bp)
GGGATTCTGTCCCATCCTTCATCTA
LOC_Os01g74340
Os.21875.1.S1_at--543--2391Chr01:43398501..43398674 (25 bp)
AAACTCTTCATTGGCGGTCTTTCTT
LOC_Os01g74340
Os.21875.1.S1_at--182--10551Chr01:43398507..43398680 (25 bp)
TTCATTGGCGGTCTTTCTTACGATA
LOC_Os01g74340
Os.21875.1.S1_at--138--2491Chr01:43399087..43399111 (25 bp)
AACAGCGGATGATCTGGTGCCACTT
NONE
Os.21875.1.S1_at--573--3611Chr01:43399115..43399139 (25 bp)
CTTGGAGGAGTAAGTGTCTTGTCTT
NONE
Os.21875.1.S1_at--804--8051Chr01:43399154..43399178 (25 bp)
GGAGAGCTCAACTAAGGCATGTATT
NONE
Os.21875.1.S1_at--44--1151Chr01:43399190..43399214 (25 bp)
AGTCTTTCGTTTTCATGGCTAGCAA
NONE
Os.21875.1.S1_at--38--871Chr01:43399204..43399228 (25 bp)
ATGGCTAGCAATATGCACCTCTGCA
NONE
Os.21875.1.S1_at--354--5091Chr01:43399218..43399242 (25 bp)
GCACCTCTGCATATGTGGGTTTCAA
NONE
Os.21875.1.S1_at--308--3551Chr01:43399251..43399275 (25 bp)
CATCTCCCCAATACACAAGTCATTT
NONE
Os.21875.1.S1_at--662--2511Chr01:43399289..43399313 (25 bp)
AACATTTATTCTGTATTCTGCTGAA
NONE
Target Sequence 
GGGATTCTGTCCCATCCTTCATCTACTGCCCGTGCCCGTGCCTCTTNCTCCTCCTGCCGCTCCAAACTCTTCATTGGCGG
TCTTTCTTACGATACAAATGAGACTGCTCTCAAGGATGCTTTCTCTCAGCATGGCCATATTATTCAAGTGAAGGTAATAT
GCCACCCAGTGACAGGGAAATCCAAAGGGTATGGCTTTGTCAAGTTTGCCTCAGAAGATGAAGCTGCTGCAGCATTGCAC
AAGATGGGGGGTGAGGTGATTGATGGAAGGAACATAAGGGTACACTATGCAAACAGCGGATGATCTGGTGCCACTTCTTC
TTGGAGGAGTAAGTGTCTTGTCTTGTGTCGGGGTGCATGGAGAGCTCAACTAAGGCATGTATTTGTAGATATGTAGTCTT
TCGTTTTCATGGCTAGCAATATGCACCTCTGCATATGTGGGTTTCAATCTTGTCCCATCTCCCCAATACACAAGTCATTT
GATATATCATCTAAACATTTATTCTGTATTCTGCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21875.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis