Browse Element(s) Details


Os.7762.1.S1_at

Description gb:AK059210.1
DB_XREF= gi:32969228
TID=Os.7762.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7762 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-204-G05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-024-B10, full insert sequence.
FL= gb:AK060593.1 gb:AK059210.1 gb:AK105908.1 gb:AK098938.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3987010/11Glycosyl hydrolase family 1 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39850Os.13008.2.S1_at11/118+25108194..25117436lipoxygenase 8, chloroplast precursor, putative, expressed
LOC_Os08g39850Os.13008.2.S1_x_at11/118+25108194..25117436lipoxygenase 8, chloroplast precursor, putative, expressed
LOC_Os08g39850Os.13008.1.S1_at11/118+25108194..25117436lipoxygenase 8, chloroplast precursor, putative, expressed
LOC_Os08g39850Os.6901.1.S1_at1/118+25108194..25117436lipoxygenase 8, chloroplast precursor, putative, expressed
LOC_Os08g39860Os.17880.1.S1_a_at11/118+25117486..25121813Non-cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os08g39870Os.7762.1.S1_at10/118+25127286..25134092Glycosyl hydrolase family 1 protein, expressed
LOC_Os08g39880Os.5805.1.S1_at11/118+25137215..25140785G-patch domain containing protein, expressed
LOC_Os08g39890Os.6636.1.S1_at10/118+25141631..25145853SBP-domain protein 5, putative, expressed
LOC_Os08g39890OsAffx.2442.1.S1_x_at1/118+25141631..25145853SBP-domain protein 5, putative, expressed
LOC_Os08g39900OsAffx.6089.1.S1_at11/118+25148126..25148752hypothetical protein
LOC_Os08g39910Os.27691.1.S1_x_at3/118+25157104..25160098retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7762.1.S1_at--751--1771Chr08:25130066..25130429 (25 bp)
ACCGAGAACGGCACTGACGAGGCGA
LOC_Os08g39870
Os.7762.1.S1_at--1022--8371Chr08:25130046..25130070 (25 bp)
GGCGAATAACAGCACGATCCCCATA
LOC_Os08g39870
Os.7762.1.S1_at--1002--8091Chr08:25130007..25130031 (25 bp)
GGACGAGACGCGGATCGGCTTCCAC
LOC_Os08g39870
Os.7762.1.S1_at--278--9031NONE
TGCACAAGGCCATCCAGGAGGGTGT
NONE
Os.7762.1.S1_at--315--11Chr08:25127698..25127722 (25 bp)
AGGGTTACTTTACATGGACGTTCAT
LOC_Os08g39870
Os.7762.1.S1_at--760--3351Chr08:25127610..25127634 (25 bp)
CACGCTCGCGAGGTTTCGCAAGAAG
LOC_Os08g39870
Os.7762.1.S1_at--343--4151Chr08:25127571..25127595 (25 bp)
CGCGGATTTCCTCCGTCGATGATGA
LOC_Os08g39870
Os.7762.1.S1_at--1155--91Chr08:25127512..25127536 (25 bp)
ATTCGATCCGATCTATATCTCCAGT
LOC_Os08g39870
Os.7762.1.S1_at--549--10151Chr08:25127497..25127521 (25 bp)
TATCTCCAGTGTACTCGATGAAGCT
LOC_Os08g39870
Os.7762.1.S1_at--1001--1471Chr08:25127395..25127419 (25 bp)
AGAATTACCAAACCTGATGTGTGCA
LOC_Os08g39870
Os.7762.1.S1_at--1143--7451Chr08:25127370..25127394 (25 bp)
GTGTGCTGCCCAAATAATTGCCATG
LOC_Os08g39870
Target Sequence 
ACCGAGAACGGCACTGACGAGGCGAATAACAGCACGATCCCCATATCCGAGGCGCTCAAGGACGAGACGCGGATCGGCTT
CCACTACAAGCACCTCCAGTTCGTGCACAAGGCCATCCAGGAGGGTGTGAAGGTGAAGGGTTACTTTACATGGACGTTCA
TGGACTGCTTCGAGTTCGGCGATGGGTTCAAGGACCGGTTCGGCCTCATCTATGTCGACCGCGCCACGCTCGCGAGGTTT
CGCAAGAAGTCCAGCTACTGGTTCGCGGATTTCCTCCGTCGATGATGATGATTCAAATGCTTCAAGCTCCTGATCGACAG
TGATTCGATCCGATCTATATCTCCAGTGTACTCGATGAAGCTAGCTTCAGGCAGCTGCCTTTTTTTTTCTTTTTTCTTTT
AAAATAAGAGAGAGAGGCAAGGCTAGGCAGGCAGCNGATAGAATTACCAAACCTGATGTGTGCAGTGTGCTGCCCAAATA
ATTGCCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7762.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis