Browse Element(s) Details


Os.7783.1.S1_at

Description gb:AK059988.1
DB_XREF= gi:32970006
TID=Os.7783.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.7783 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023087M04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-212-H11, full insert sequence.
FL= gb:AK059988.1 gb:AK071290.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3573011/11membrane protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g35680Os.8347.1.S1_at11/119+20522219..20524930F-box family protein, putative, expressed
LOC_Os09g35690Os.14356.1.S1_at11/119+20528087..20531756Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g35700Os.12835.1.S1_at10/119+20533684..20534467YY1 protein precursor, putative, expressed
LOC_Os09g35710Os.4853.1.S1_at11/119+20534840..20539762UBX domain containing protein, expressed
LOC_Os09g35710Os.4853.1.S2_at11/119+20534840..20539762UBX domain containing protein, expressed
LOC_Os09g35720OsAffx.6485.1.S1_at10/119+20541270..20547711hypothetical protein
LOC_Os09g35720OsAffx.6485.1.S1_x_at10/119+20541270..20547711hypothetical protein
LOC_Os09g35730Os.7783.1.S1_at11/119+20549370..20552826membrane protein, putative, expressed
LOC_Os09g35740Os.41257.1.S1_at1/119+20557515..20558112hypothetical protein
LOC_Os09g35750OsAffx.30143.1.S1_at10/119+20559756..20561287hypothetical protein
LOC_Os09g35760Os.57414.1.S1_x_at11/119+20568102..20573844OCL3 protein, putative, expressed
LOC_Os09g35760OsAffx.6486.1.S1_x_at10/119+20568102..20573844OCL3 protein, putative, expressed
LOC_Os09g35760Os.57416.1.S1_x_at1/119+20568102..20573844OCL3 protein, putative, expressed
LOC_Os09g35770Os.52917.1.S1_at1/119+20575896..20578473transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7783.1.S1_at--942--8251Chr09:20550118..20550142 (25 bp)
GGCAGCAGCCATAATAACTCTTCTA
LOC_Os09g35730
Os.7783.1.S1_at--381--10851Chr09:20550068..20550092 (25 bp)
TTGGGATACTACCTCATGCCGATAA
LOC_Os09g35730
Os.7783.1.S1_at--253--351Chr09:20550047..20550071 (25 bp)
ATAACTTTGCTCATATCGGTGGATT
LOC_Os09g35730
Os.7783.1.S1_at--1113--10131Chr09:20550034..20550058 (25 bp)
TATCGGTGGATTTGTGACGGGCTTC
LOC_Os09g35730
Os.7783.1.S1_at--508--8171Chr09:20549965..20549989 (25 bp)
GGAACGACATGAGTTGCCCCAAACT
LOC_Os09g35730
Os.7783.1.S1_at--584--4931Chr09:20549680..20549902 (25 bp)
GCTTGTCGGGTTTGTGGTTTCACTA
LOC_Os09g35730
Os.7783.1.S1_at--633--6831Chr09:20549664..20549688 (25 bp)
GTTTCACTAGTGATGCTCTTCAAGG
LOC_Os09g35730
Os.7783.1.S1_at--1149--6851Chr09:20549451..20549475 (25 bp)
GTTTGTTCTTTACTGTATCGCGATT
LOC_Os09g35730
Os.7783.1.S1_at--732--10151Chr09:20549436..20549460 (25 bp)
TATCGCGATTTGTTCTTCCTGTAAA
LOC_Os09g35730
Os.7783.1.S1_at--538--9171Chr09:20549420..20549444 (25 bp)
TCCTGTAAATTTGTTCCGTCGGCCA
LOC_Os09g35730
Os.7783.1.S1_at--259--9291Chr09:20549406..20549430 (25 bp)
TCCGTCGGCCACTGAAGTTTATATA
LOC_Os09g35730
Target Sequence 
GGCAGCAGCCATAATAACTCTTCTATTTATAATCGCAATCAACTTGGCTATTGGGATACTACCTCATGCCGATAACTTTG
CTCATATCGGTGGATTTGTGACGGGCTTCCTTTTGGGATTTGTTTTGTTGGCAAGGCCACAGTTTGGTTGGATGGAACGA
CATGAGTTGCCCCAAACTAATCAGCCTCCCAAATACAAAGCATACCAATATGTTTTGTGGGTTGTGGCATTCGTTTTGCT
GCTTGTCGGGTTTGTGGTTTCACTAGTGATGCTCTTCAAGGGTAAGAATGGAAATGACGGATGCCACTGGTGCCACTACC
TGAACTGCGTACCCACATCGAAGTGGAAGTGCAATACCTAAGGAGTTTAGTTTTCTGTTGAATTTTCGGCAAAAAAAAAA
AAANCCGTAGTATTCAGAGGACCATTTTATGCTTGTGTGTTTGTAGATATATGAACAAATTTGTTTATCATGTTTGTTCT
TTACTGTATCGCGATTTGTTCTTCCTGTAAATTTGTTCCGTCGGCCACTGAAGTTTATATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7783.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis