Browse Element(s) Details


Os.7864.1.S1_at

Description gb:AK067057.1
DB_XREF= gi:32977075
TID=Os.7864.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7864 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-304-A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013089C03, full insert sequence.
FL= gb:AK067057.1 gb:AK104198.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6010011/1150S ribosomal protein L17, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60050NANA3+34090307..34096975retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g60060NANA3+34099228..34100983transposon protein, putative, unclassified
LOC_Os03g60080Os.26695.1.S1_at11/113+34105034..34106478NAC-domain containing protein 19, putative, expressed
LOC_Os03g60090Os.7657.1.S1_at11/113+34106735..34112262Methylenetetrahydrofolate reductase, putative, expressed
LOC_Os03g60090OsAffx.17472.1.S1_at1/113+34106735..34112262Methylenetetrahydrofolate reductase, putative, expressed
LOC_Os03g60100Os.7864.1.S1_at11/113+34113713..3411562650S ribosomal protein L17, putative, expressed
LOC_Os03g60110Os.5675.1.S1_at11/113+34125371..34129755KH domain-containing protein, putative, expressed
LOC_Os03g60120Os.14299.1.S1_at11/113+34131362..34132584AP2 domain containing protein, expressed
LOC_Os03g60130Os.37576.1.S1_at11/113+34134060..34136924transcription elongation factor S-II family protein, expressed
LOC_Os03g60140OsAffx.3651.1.S1_at9/113+34138016..34140761hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005840cellular_componentribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7864.1.S1_at--1018--7631Chr03:34114652..34114676 (25 bp)
GGGAGGCGTGTTCCTAAACTTAGCA
LOC_Os03g60100
Os.7864.1.S1_at--891--10431Chr03:34114671..34114695 (25 bp)
TTAGCAGACCTCCAGATCAGCGAAA
LOC_Os03g60100
Os.7864.1.S1_at--1112--5571Chr03:34114692..34114716 (25 bp)
GAAAGGCACTTCTGCGCGGGCTGAC
LOC_Os03g60100
Os.7864.1.S1_at--737--5131Chr03:34114805..34114829 (25 bp)
GCAAAGGATGGGTCTCTTCACAAGA
LOC_Os03g60100
Os.7864.1.S1_at--742--6171Chr03:34114828..34114852 (25 bp)
GAGGAGGCAGGCTCTGGCTTTTATC
LOC_Os03g60100
Os.7864.1.S1_at--43--10191Chr03:34114864..34114888 (25 bp)
TATAGTCCATGCGTTGTTCGCTGAG
LOC_Os03g60100
Os.7864.1.S1_at--252--6431Chr03:34114930..34114954 (25 bp)
GATCATCCCAACATTTCCAAGACGG
LOC_Os03g60100
Os.7864.1.S1_at--1122--5971Chr03:34114956..34114980 (25 bp)
GAGACAATGCACCTATGGCTTACAT
LOC_Os03g60100
Os.7864.1.S1_at--45--3611Chr03:34114978..34115382 (25 bp)
CATTGAGCTTGTCTAGGAGGCCGTT
LOC_Os03g60100
Os.7864.1.S1_at--924--8191Chr03:34115537..34115561 (25 bp)
GGAAGTGTTCCTGGCACCATAATCT
LOC_Os03g60100
Os.7864.1.S1_at--1040--4311Chr03:34115553..34115577 (25 bp)
CCATAATCTGGTGCCCTTGAAGTTA
LOC_Os03g60100
Target Sequence 
GGGAGGCGTGTTCCTAAACTTAGCAGACCTCCAGATCAGCGAAAGGCACTTCTGCGCGGGCTGACCACGCAGCTGCTCAA
GTACGGAAGGATAAAGACTACCAGGCCAAGAGCAAAGGCAATGAGGAAGTATGTTGAGAAGATGATCACACTGGCAAAGG
ATGGGTCTCTTCACAAGAGGAGGCAGGCTCTGGCTTTTATCTATGAGAAGCATATAGTCCATGCGTTGTTCGCTGAGGTT
GCAGACAGGTATGGGGAAAGAGAGGGGGGCTACACAAGGATCATCCCAACATTTCCAAGACGGGGAGACAATGCACCTAT
GGCTTACATTGAGCTTGTCTAGGAGGCCGTTCATTTGAGCGCGCTGCCTAGGTGGAGGGGTCAAGGGAATGCCTTTTTGA
ATATCTGTTTACATATTTTCTTTTGTAACAAAATGTAGATCATGTGTGAAGTTTTGAACAGTGGAATTTCTATCCTGTAA
CTACGAAAGCATTGTGCTACATTTTGGAAGTGTTCCTGGCACCATAATCTGGTGCCCTTGAAGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7864.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis