Browse Element(s) Details


Os.7894.1.S1_at

Description gb:AF486280.2
DB_XREF= gi:30313360
TID=Os.7894.1
CNT=62
FEA=FLmRNA
TIER=FL+Stack
STK=25
UG=Os.7894 (NCBI UniGene Cluster)
DEF=Oryza sativa cytosolic 6-phosphogluconate dehydrogenase mRNA, complete cds.
PROD=cytosolic 6-phosphogluconate dehydrogenase
FL= gb:AF486280.2 gb:AK065920.1 gb:AK059699.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0214411/116-phosphogluconate dehydrogenase, decarboxylating, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g02090OsAffx.15227.1.S1_s_at11/116+615415..617865hAT family dimerisation domain containing protein
LOC_Os06g02090OsAffx.15227.2.S1_x_at11/116+615415..617865hAT family dimerisation domain containing protein
LOC_Os06g02100Os.49022.1.S1_at11/116+622552..625087F-box domain containing protein, expressed
LOC_Os06g02110Os.34056.1.S1_at11/116+625262..627762F-box domain containing protein, expressed
LOC_Os06g02110Os.55536.1.S1_at1/116+625262..627762F-box domain containing protein, expressed
LOC_Os06g02120Os.21199.1.S1_s_at11/116+628710..632784pentatricopeptide, putative, expressed
LOC_Os06g02130Os.15324.1.S1_at11/116+633263..639451G-protein alpha subunit, putative, expressed
LOC_Os06g02144Os.7894.1.S1_at11/116+642711..6457266-phosphogluconate dehydrogenase, decarboxylating, putative, expressed
LOC_Os06g02160Os.35821.1.S1_at7/116+646480..655657AMP-binding enzyme family protein, expressed
LOC_Os06g02160Os.33192.1.S1_at1/116+646480..655657AMP-binding enzyme family protein, expressed
LOC_Os06g02170Os.16379.1.S1_at11/116+656278..658069expressed protein
LOC_Os06g02180Os.25614.1.S1_at11/116+659149..664392cellulose synthase-like protein D4, putative, expressed
LOC_Os06g02180Os.57510.1.S1_x_at1/116+659149..664392cellulose synthase-like protein D4, putative, expressed
LOC_Os06g02190OsAffx.15230.1.S1_at11/116+668561..668830hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0004616molecular_functionphosphogluconate dehydrogenase (decarboxylating) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7894.1.S1_at--555--5291Chr06:645160..645184 (25 bp)
GAAGGCCTACGACAGGAACTCCGAC
LOC_Os06g02144
Os.7894.1.S1_at--171--6051Chr06:645221..645245 (25 bp)
GAGATCATGGACAGGCAAGCGGCAT
LOC_Os06g02144
Os.7894.1.S1_at--173--7511Chr06:645254..645278 (25 bp)
GTGGTCTGCCTTGCCATCAACAATG
LOC_Os06g02144
Os.7894.1.S1_at--71--9891Chr06:645314..645338 (25 bp)
TACTTCGACTCCTACCGGAGGGACA
LOC_Os06g02144
Os.7894.1.S1_at--764--7771Chr06:645355..645379 (25 bp)
GGTGCAGGCACAGAGGGACTATTTC
LOC_Os06g02144
Os.7894.1.S1_at--49--7591Chr06:645381..645405 (25 bp)
GGGCTCACACCTACGAGAGGGTCGA
LOC_Os06g02144
Os.7894.1.S1_at--810--2791Chr06:645437..645461 (25 bp)
AAGATCGCGCGTGCTGCTAAGATGT
LOC_Os06g02144
Os.7894.1.S1_at--476--7831Chr06:645480..645504 (25 bp)
GGTAATATTTGGTTGCTGCTTGCTG
LOC_Os06g02144
Os.7894.1.S1_at--175--10111Chr06:645545..645569 (25 bp)
TATGGTCAATGTGCTACGCTTAATT
LOC_Os06g02144
Os.7894.1.S1_at--460--7271Chr06:645581..645605 (25 bp)
GTCCATAGCTATCTCCATTCTTTTA
LOC_Os06g02144
Os.7894.1.S1_at--941--8171Chr06:645652..645676 (25 bp)
GGAACCTTTGTTGTGATCTTTGTAA
LOC_Os06g02144
Target Sequence 
GAAGGCCTACGACAGGAACTCCGACCTCGCCAACCTGCTCGTGGACCCTGAGTTCGCTCAGGAGATCATGGACAGGCAAG
CGGCATGGCGCAGGGTGGTCTGCCTTGCCATCAACAATGGCGTCAGCACCCCAGGCATGTCGGCGAGTCTCGCGTACTTC
GACTCCTACCGGAGGGACAGGCTGCCTGCCAACCTGGTGCAGGCACAGAGGGACTATTTCGGGGCTCACACCTACGAGAG
GGTCGACATGCCCGGCTCCTTCCACACCGAGTGGTTCAAGATCGCGCGTGCTGCTAAGATGTGAAATGCTTCAAATTTTC
GGTAATATTTGGTTGCTGCTTGCTGCTGAGTCGCTTGTAGGGTGGGAGGAACTGTTGTTAAATTTTATGGTCAATGTGCT
ACGCTTAATTTGGATAAGGAGGTCCATAGCTATCTCCATTCTTTTAATGTAAGGAGCAGCCCAGGGTGGAGAGAACATGG
ATATTTATCATTGGAACCTTTGTTGTGATCTTTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7894.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis